Hessian QM9: A quantum chemistry database of molecular Hessians in implicit solvents.

IF 6.9 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Scientific Data Pub Date : 2025-01-03 DOI:10.1038/s41597-024-04361-2
Nicholas J Williams, Lara Kabalan, Ljiljana Stojanovic, Viktor Zólyomi, Edward O Pyzer-Knapp
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Abstract

A significant challenge in computational chemistry is developing approximations that accelerate ab initio methods while preserving accuracy. Machine learning interatomic potentials (MLIPs) have emerged as a promising solution for constructing atomistic potentials that can be transferred across different molecular and crystalline systems. Most MLIPs are trained only on energies and forces in vacuum, while an improved description of the potential energy surface could be achieved by including the curvature of the potential energy surface. We present Hessian QM9, the first database of equilibrium configurations and numerical Hessian matrices, consisting of 41,645 molecules from the QM9 dataset at the ωB97x/6-31G* level. Molecular Hessians were calculated in vacuum, as well as water, tetrahydrofuran, and toluene using an implicit solvation model. To demonstrate the utility of this dataset, we show that incorporating second derivatives of the potential energy surface into the loss function of a MLIP significantly improves the prediction of vibrational frequencies in all solvent environments, thus making this dataset extremely useful for studying organic molecules in realistic solvent environments for experimental characterization.

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Hessian QM9:隐式溶剂中Hessian分子的量子化学数据库。
计算化学的一个重大挑战是在保持精度的同时开发加速从头算方法的近似。机器学习原子间电位(MLIPs)已经成为构建原子电位的一种有前途的解决方案,可以在不同的分子和晶体系统之间转移。大多数mlip只训练真空中的能量和力,而通过包含势能表面的曲率可以实现对势能表面的改进描述。我们提出了Hessian QM9,这是第一个平衡构型和数值Hessian矩阵的数据库,由来自QM9数据集的41,645个ωB97x/6-31G*级别的分子组成。使用隐式溶剂化模型计算了真空、水、四氢呋喃和甲苯中的分子Hessians。为了证明该数据集的实用性,我们表明,将势能表面的二阶导数纳入MLIP的损失函数中可以显着提高所有溶剂环境中振动频率的预测,从而使该数据集对于在现实溶剂环境中研究有机分子进行实验表征非常有用。
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来源期刊
Scientific Data
Scientific Data Social Sciences-Education
CiteScore
11.20
自引率
4.10%
发文量
689
审稿时长
16 weeks
期刊介绍: Scientific Data is an open-access journal focused on data, publishing descriptions of research datasets and articles on data sharing across natural sciences, medicine, engineering, and social sciences. Its goal is to enhance the sharing and reuse of scientific data, encourage broader data sharing, and acknowledge those who share their data. The journal primarily publishes Data Descriptors, which offer detailed descriptions of research datasets, including data collection methods and technical analyses validating data quality. These descriptors aim to facilitate data reuse rather than testing hypotheses or presenting new interpretations, methods, or in-depth analyses.
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