{"title":"Brain metastasis prediction","authors":"Tiago Faial","doi":"10.1038/s41588-024-02061-6","DOIUrl":null,"url":null,"abstract":"<p>Brain metastases are common and highly deadly occurrences that derive from primary cancer, especially in patients with lung adenocarcinoma (LUAD). However, it is challenging to predict if and when these metastases will appear. To better understand this issue, Zuccato et al. studied 402 LUAD tumor and plasma samples from patients with or without brain metastases. Specifically, they analyzed DNA methylation signatures and other clinical variables to derive a model that predicts the development of brain metastases. They found that promoters for some immune- and cell interaction-related genes were differentially methylated in brain metastases. Additionally, the abundance of certain immune cells was different in brain metastases versus LUAD. Importantly, they successfully leveraged the identification of liquid biomarkers — based on an analysis of methylated cell-free DNA obtained from plasma samples — to create and validate classifiers for early detection of brain metastases. The notion that LUAD methylomes can be used to predict the development of brain metastases in a noninvasive manner is a potentially exciting step toward personalized medicine. It will be interesting to investigate whether similar approaches can be used to predict the formation of brain metastases originating from other cancer types, and more broadly to predict different kinds of metastases in other organs.</p><p><b>Original reference:</b> <i>Nat. Med</i>. https://doi.org/10.1038/s41591-024-03286-y (2024)</p>","PeriodicalId":18985,"journal":{"name":"Nature genetics","volume":"26 1","pages":""},"PeriodicalIF":31.7000,"publicationDate":"2025-01-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Nature genetics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1038/s41588-024-02061-6","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0
Abstract
Brain metastases are common and highly deadly occurrences that derive from primary cancer, especially in patients with lung adenocarcinoma (LUAD). However, it is challenging to predict if and when these metastases will appear. To better understand this issue, Zuccato et al. studied 402 LUAD tumor and plasma samples from patients with or without brain metastases. Specifically, they analyzed DNA methylation signatures and other clinical variables to derive a model that predicts the development of brain metastases. They found that promoters for some immune- and cell interaction-related genes were differentially methylated in brain metastases. Additionally, the abundance of certain immune cells was different in brain metastases versus LUAD. Importantly, they successfully leveraged the identification of liquid biomarkers — based on an analysis of methylated cell-free DNA obtained from plasma samples — to create and validate classifiers for early detection of brain metastases. The notion that LUAD methylomes can be used to predict the development of brain metastases in a noninvasive manner is a potentially exciting step toward personalized medicine. It will be interesting to investigate whether similar approaches can be used to predict the formation of brain metastases originating from other cancer types, and more broadly to predict different kinds of metastases in other organs.
Original reference:Nat. Med. https://doi.org/10.1038/s41591-024-03286-y (2024)
期刊介绍:
Nature Genetics publishes the very highest quality research in genetics. It encompasses genetic and functional genomic studies on human and plant traits and on other model organisms. Current emphasis is on the genetic basis for common and complex diseases and on the functional mechanism, architecture and evolution of gene networks, studied by experimental perturbation.
Integrative genetic topics comprise, but are not limited to:
-Genes in the pathology of human disease
-Molecular analysis of simple and complex genetic traits
-Cancer genetics
-Agricultural genomics
-Developmental genetics
-Regulatory variation in gene expression
-Strategies and technologies for extracting function from genomic data
-Pharmacological genomics
-Genome evolution