When lettuce bolts: natural selection vs artificial selection and beyond

IF 8.1 1区 生物学 Q1 PLANT SCIENCES New Phytologist Pub Date : 2025-01-24 DOI:10.1111/nph.20402
Dandan Yang, Cao Xu
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Genetic variation in lettuce not only serves as a crucial resource for breeding and improvement but also offers opportunities to identify key genes for bolting. In this study, Qi <i>et al</i>. generated a segregating population by crossing a crisphead-type cultivar with a stem-type cultivar to map the <i>LsKN1</i> allele. They demonstrate that the activated allele, LsKN1<sup>TP</sup>, resulting from a CACTA-like transposon insertion, delays bolting by reducing GA content through the direct suppression of <i>LsGA20ox1</i> expression and the activation of <i>LsRGA1</i> expression. Interestingly, LsOFP6 (OVATE family protein 6) functions as a regulatory brake by interacting with LsKN1<sup>TP</sup>, thereby attenuating its inhibitory effects on GA biosynthesis and signaling responses. This molecular brake mechanism can facilitate environmental adaptability in bolting rates observed in lettuce.</p><p>In addition, Qi <i>et al</i>. investigated the expression levels of LsRGA1(<i>REPRESSOR OF GA 1</i>) across different types of lettuce and revealed lower expression values in stem-type cultivars. This observation raises intriguing questions about how domestication has shaped the genetic architecture of bolting-related traits. Under natural conditions, early bolting may confer adaptive advantages, such as ensuring reproductive success in a vast range of various environments. By contrast, delayed bolting is a trait favored in cultivated lettuce, where prolonged vegetative growth is essential for marketability. This divergence illustrates the evolutionary balance between natural selection in the wild and artificial selection during domestication, suggesting that domestication often results in purifying the selection of genomic regions that control agronomic traits favored by humans.</p><p>The discovery of <i>LsKN1</i> and its functional role in bolting regulation underscores the importance of exploring genetic variation within lettuce. Wild relative species are often used in crop breeding as a source of novel traits. Lettuce cultivars are domesticated from their progenitor, <i>Lactuca serriola</i> (Wei <i>et al</i>., <span>2021</span>), which harbors a wealth of natural genetic diversity, shaped by millennia of evolutionary pressures in diverse environments. <i>Lactuca serriola</i> plays a vital role in lettuce breeding, serving as a donor for trait developments, such as carotenoid content, bolting time, water use efficiency, and resistance to diseases and insects (Chadha &amp; Florentine, <span>2021</span>). Hormonal cross-talk is central to coordinating complex developmental and stress-response pathways. For instance, abscisic acid (ABA) and jasmonic acid (JA), both key regulators of stress responses, often antagonize each other and interact with GA signaling. This raises intriguing questions: can ABA or JA modulate GA-mediated bolting in lettuce? ABA, typically associated with drought responses, might delay bolting by antagonizing GA signaling under water-limited conditions. Similarly, JA, which is implicated in herbivore defense, could intersect with GA pathways to influence resource allocation during bolting. Investigating these interactions in <i>L. serriola</i> could uncover new regulatory mechanisms, such as how plants balance growth and defense during the vegetative-to-reproductive transition. Understanding these trade-offs could inform strategies to optimize resource allocation in cultivated lettuce.</p><p>Additionally, plants of the <i>Lactuca</i> genus produce latex, particularly in the stem. This milky fluid, extracted from laticifers, serves as a defense mechanism against herbivores by deterring pests with its bitter taste and sticky texture. More importantly, the latex contains natural rubber (<i>cis</i>-1,4-polyisoprene), an important plant derived bioproduct essential in the manufacture of over 40 000 products (Mooibroek &amp; Cornish, <span>2000</span>). <i>Lactuca serriola</i> shows a stronger ability to produce rubber than cultivated lettuce, along with a higher biomass yield (Bushman <i>et al</i>., <span>2006</span>). It is also tolerant and well adapted to cultivation on marginal land, alleviating field competition with food crops. As such, it has great potential to be a new type of crop after <i>de novo</i> domestication (Li <i>et al</i>., <span>2018</span>) for producing high-quality natural rubber. The fact that the synthesis of rubber takes a lot of energy out of the plant is another mystery. Considering that it cannot be metabolized, what value does it have to the plant? 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引用次数: 0

Abstract

The vegetative–flowering transition is regulated by a complex network of genetic and environmental factors. Over the past decade, many genes have been implicated in the control of flowering time in Arabidopsis thaliana (Bouché et al., 2016). Investigating homologous genes and their regulatory mechanisms has provided insights into the molecular mechanism of bolting in lettuce (Fukuda et al., 2011, 2017). However, lettuce has a more complex genome and unique features in terms of vegetable crop traits compared with Arabidopsis. Modern lettuce variants exhibit tremendous morphological variation, especially regarding the rate of transition to flowering (Ryder, 1988; Zhang et al., 2017). Genetic variation in lettuce not only serves as a crucial resource for breeding and improvement but also offers opportunities to identify key genes for bolting. In this study, Qi et al. generated a segregating population by crossing a crisphead-type cultivar with a stem-type cultivar to map the LsKN1 allele. They demonstrate that the activated allele, LsKN1TP, resulting from a CACTA-like transposon insertion, delays bolting by reducing GA content through the direct suppression of LsGA20ox1 expression and the activation of LsRGA1 expression. Interestingly, LsOFP6 (OVATE family protein 6) functions as a regulatory brake by interacting with LsKN1TP, thereby attenuating its inhibitory effects on GA biosynthesis and signaling responses. This molecular brake mechanism can facilitate environmental adaptability in bolting rates observed in lettuce.

In addition, Qi et al. investigated the expression levels of LsRGA1(REPRESSOR OF GA 1) across different types of lettuce and revealed lower expression values in stem-type cultivars. This observation raises intriguing questions about how domestication has shaped the genetic architecture of bolting-related traits. Under natural conditions, early bolting may confer adaptive advantages, such as ensuring reproductive success in a vast range of various environments. By contrast, delayed bolting is a trait favored in cultivated lettuce, where prolonged vegetative growth is essential for marketability. This divergence illustrates the evolutionary balance between natural selection in the wild and artificial selection during domestication, suggesting that domestication often results in purifying the selection of genomic regions that control agronomic traits favored by humans.

The discovery of LsKN1 and its functional role in bolting regulation underscores the importance of exploring genetic variation within lettuce. Wild relative species are often used in crop breeding as a source of novel traits. Lettuce cultivars are domesticated from their progenitor, Lactuca serriola (Wei et al., 2021), which harbors a wealth of natural genetic diversity, shaped by millennia of evolutionary pressures in diverse environments. Lactuca serriola plays a vital role in lettuce breeding, serving as a donor for trait developments, such as carotenoid content, bolting time, water use efficiency, and resistance to diseases and insects (Chadha & Florentine, 2021). Hormonal cross-talk is central to coordinating complex developmental and stress-response pathways. For instance, abscisic acid (ABA) and jasmonic acid (JA), both key regulators of stress responses, often antagonize each other and interact with GA signaling. This raises intriguing questions: can ABA or JA modulate GA-mediated bolting in lettuce? ABA, typically associated with drought responses, might delay bolting by antagonizing GA signaling under water-limited conditions. Similarly, JA, which is implicated in herbivore defense, could intersect with GA pathways to influence resource allocation during bolting. Investigating these interactions in L. serriola could uncover new regulatory mechanisms, such as how plants balance growth and defense during the vegetative-to-reproductive transition. Understanding these trade-offs could inform strategies to optimize resource allocation in cultivated lettuce.

Additionally, plants of the Lactuca genus produce latex, particularly in the stem. This milky fluid, extracted from laticifers, serves as a defense mechanism against herbivores by deterring pests with its bitter taste and sticky texture. More importantly, the latex contains natural rubber (cis-1,4-polyisoprene), an important plant derived bioproduct essential in the manufacture of over 40 000 products (Mooibroek & Cornish, 2000). Lactuca serriola shows a stronger ability to produce rubber than cultivated lettuce, along with a higher biomass yield (Bushman et al., 2006). It is also tolerant and well adapted to cultivation on marginal land, alleviating field competition with food crops. As such, it has great potential to be a new type of crop after de novo domestication (Li et al., 2018) for producing high-quality natural rubber. The fact that the synthesis of rubber takes a lot of energy out of the plant is another mystery. Considering that it cannot be metabolized, what value does it have to the plant? It has been suggested that rubber is produced in the plant as a response to its overproduction of photosynthesis and is therefore likely to be a metabolic ‘spillover’ (Paterson-Jones et al., 1990). Moreover, it has been reported that the initiation of flower signaling leads to the accumulation of latex. Is there a potential link between bolting and latex production? Could there be an energy metabolism trade-off, or is there a more efficient mechanism for energy allocation? Investigating this question from an evolutionary standpoint may offer deeper insights into the molecular mechanisms governing bolting in lettuce. Elucidation of this intriguing phenomenon not only deepens our understanding of bolting regulation in lettuce but can also facilitate the de novo domestication of wild lettuce to produce natural rubber.

Qi et al.'s research exemplifies the power of leveraging natural genetic diversity to address key agricultural challenges. By identifying LsKN1 as a master regulator of bolting and linking its activity to hormonal signaling pathways, their study advances our understanding of lettuce development and provides actionable insights for breeding programs. Wild relatives like L. serriola are more than genetic resources for improving agronomic traits, they are living repositories of evolutionary adaptations. Traits, such as stress resilience and latex production, offer valuable lessons for enhancing plant productivity and defense. At the same time, the crosstalk between hormonal pathways like GA, ABA, and JA highlights the intricate regulatory networks that underpin plant development and survival. Preserving and studying wild lettuce populations is crucial for unlocking their full potential. As global agriculture faces mounting pressures from climate change and resource scarcity, L. serriola serves as a reminder of the untapped solutions inherent in nature's diversity. By integrating insights from wild and domesticated populations, researchers can bridge the gap between fundamental plant biology and applied agricultural innovation, ensuring a sustainable future for crop breeding.

The New Phytologist Foundation remains neutral with regard to jurisdictional claims in maps and in any institutional affiliations.

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当生菜发芽:自然选择vs人工选择以及其他
抽苔是开花植物从营养发育到生殖发育的过渡阶段,是开花植物发育的关键步骤。确定抽苔的时间是一个关键的生活史特征,随着时间的推移,它已经进化到在不同的环境中优化生殖成功(Jung &amp;穆勒,2009)。在莴苣(Lactuca sativa L.)等主要因其可食用的莲座叶而种植的作物中,抽苔标志着营养叶生产的结束和开花的开始(Van Treuren et al., 2012)。过早抽苔显著降低生菜营养生长生物量。值得注意的是,花信号的启动会引起生化变化,导致乳胶在叶片中积累,导致不受欢迎的苦味和影响作物质量(Simonne et al., 2002)。因此,揭示控制营养开花转变的调控网络将有助于开发抗过早抽苔的生菜品种。Qi等人最近发表在《新植物学家》(new Phytologist, 2024, doi: 10.1111/nph.20307)上的一篇新论文发现,在这一过程中,一个关键的螺栓调节因子LsKN1 (KNOTTED 1)转录因子。LsKN1的一个自然变异等位基因可以调节赤霉素(GA)途径,延缓现代生菜的抽苔。这一发现不仅促进了我们对生菜抽苔的理解,而且突出了利用自然遗传多样性改善作物性状和应对环境挑战的潜力。Qi等人的研究证明了利用自然遗传多样性解决关键农业挑战的力量。“从植物到开花的转变是由遗传和环境因素组成的复杂网络调控的。在过去的十年中,许多基因都与拟南芥的开花时间控制有关(bouch<s:1>等人,2016)。研究同源基因及其调控机制为莴苣抽苔的分子机制提供了新的见解(Fukuda et al., 2011, 2017)。然而,与拟南芥相比,生菜具有更复杂的基因组和独特的蔬菜作物性状。现代生菜变种表现出巨大的形态变异,特别是在向开花过渡的速度方面(Ryder, 1988;Zhang等人,2017)。莴苣的遗传变异不仅是莴苣育种和改良的重要资源,而且为抽苔关键基因的鉴定提供了机会。在本研究中,Qi等人通过将一个薯片型品种与一个茎型品种杂交,生成了一个分离群体,绘制了LsKN1等位基因图谱。他们证明,激活的等位基因LsKN1TP是由类似cacta的转座子插入引起的,通过直接抑制LsGA20ox1的表达和激活LsRGA1的表达,通过降低GA含量来延迟螺栓连接。有趣的是,LsOFP6 (OVATE家族蛋白6)通过与LsKN1TP相互作用,起到调控刹车的作用,从而减弱其对GA生物合成和信号反应的抑制作用。这种分子制动机制促进了生菜抽苔率的环境适应性。此外,Qi等人研究了LsRGA1(GA1的阻遏因子)在不同类型生菜中的表达水平,发现茎型品种的表达水平较低。这一观察结果提出了一个有趣的问题,即驯化如何塑造了与跳跃相关的性状的遗传结构。在自然条件下,早抽苔可能会带来适应性优势,例如确保在各种环境中成功繁殖。相比之下,延迟抽苔是栽培莴苣所青睐的性状,其中延长的营养生长对适销性至关重要。这种差异说明了驯化过程中自然选择和人工选择之间的进化平衡,表明驯化通常导致控制人类偏好的农艺性状的基因组区域的净化选择。LsKN1的发现及其在抽苔调控中的功能作用强调了探索生菜遗传变异的重要性。野生近缘种常用于作物育种,作为新性状的来源。生菜品种是从其祖先lacuca serriola (Wei et al., 2021)驯化而来的,后者具有丰富的自然遗传多样性,是在不同环境中数千年的进化压力下形成的。莴苣在莴苣育种中起着至关重要的作用,作为性状发育的供体,如类胡萝卜素含量、抽苔时间、水分利用效率和抗病虫害能力(Chadha &amp;佛罗伦萨,2021)。荷尔蒙串扰是协调复杂的发育和应激反应途径的核心。例如,脱落酸(ABA)和茉莉酸(JA)都是应激反应的关键调节因子,它们经常相互拮抗并与GA信号相互作用。 这就提出了一个有趣的问题:ABA或JA是否可以调节ga介导的生菜抽苔?ABA通常与干旱反应有关,在缺水条件下可能通过拮抗GA信号来延迟抽苔。同样,与草食动物防御有关的JA可能与遗传途径交叉,影响抽苔过程中的资源分配。研究这些相互作用可以揭示新的调控机制,例如植物如何在植物向生殖过渡的过程中平衡生长和防御。了解这些权衡可以为优化生菜资源配置提供策略。此外,乳胶树属植物产生乳胶,特别是在茎部。这种乳白色的液体是从乳汁管中提取出来的,它的苦味和粘稠的质地可以阻止害虫,从而起到防御食草动物的作用。更重要的是,乳胶含有天然橡胶(顺式-1,4-聚异戊二烯),这是一种重要的植物衍生生物制品,在生产超过40000种产品(Mooibroek &amp;康沃尔,2000)。serriola莴苣比栽培莴苣生产橡胶的能力更强,生物量产量也更高(Bushman et al., 2006)。它还具有耐受性,非常适合在边缘土地上种植,减轻了与粮食作物的田间竞争。因此,经过重新驯化(Li et al., 2018),它有很大的潜力成为一种生产高品质天然橡胶的新型作物。橡胶的合成消耗了植物大量的能量,这是另一个谜。考虑到它不能被代谢,它对植物有什么价值?有人认为,橡胶是植物对其光合作用过剩的一种反应,因此可能是一种代谢“溢出”(patterson - jones et al., 1990)。此外,据报道,花信号的启动导致乳胶的积累。螺栓连接和乳胶生产之间是否存在潜在的联系?是否存在能量代谢的权衡,或者是否存在更有效的能量分配机制?从进化的角度研究这个问题可能会对莴苣抽苔的分子机制有更深入的了解。对这一有趣现象的阐明不仅加深了我们对生菜抽苔规律的认识,而且有助于野生生菜重新驯化以生产天然橡胶。Qi等人的研究证明了利用自然遗传多样性解决关键农业挑战的力量。通过确定LsKN1是抽苔的主要调控因子,并将其活性与激素信号通路联系起来,他们的研究促进了我们对生菜发育的理解,并为育种计划提供了可行的见解。像serriola这样的野生亲缘菌不仅仅是改善农艺性状的遗传资源,它们还是进化适应的活资源库。抗逆性和乳胶产量等性状为提高植物的生产力和防御能力提供了宝贵的经验。与此同时,GA、ABA和JA等激素通路之间的相互作用凸显了支撑植物发育和生存的复杂调控网络。保存和研究野生生菜种群对于释放其全部潜力至关重要。随着全球农业面临着气候变化和资源短缺带来的越来越大的压力,serriola提醒人们,自然多样性中蕴藏着尚未开发的解决方案。通过整合野生种群和驯化种群的见解,研究人员可以弥合基础植物生物学和应用农业创新之间的差距,确保作物育种的可持续未来。
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New Phytologist
New Phytologist 生物-植物科学
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期刊介绍: New Phytologist is an international electronic journal published 24 times a year. It is owned by the New Phytologist Foundation, a non-profit-making charitable organization dedicated to promoting plant science. The journal publishes excellent, novel, rigorous, and timely research and scholarship in plant science and its applications. The articles cover topics in five sections: Physiology & Development, Environment, Interaction, Evolution, and Transformative Plant Biotechnology. These sections encompass intracellular processes, global environmental change, and encourage cross-disciplinary approaches. The journal recognizes the use of techniques from molecular and cell biology, functional genomics, modeling, and system-based approaches in plant science. Abstracting and Indexing Information for New Phytologist includes Academic Search, AgBiotech News & Information, Agroforestry Abstracts, Biochemistry & Biophysics Citation Index, Botanical Pesticides, CAB Abstracts®, Environment Index, Global Health, and Plant Breeding Abstracts, and others.
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