Genome sequence resources for three strains of the genus Clonostachys.

IF 2.5 Q3 GENETICS & HEREDITY BMC genomic data Pub Date : 2025-01-24 DOI:10.1186/s12863-025-01297-3
Zongping Sun, Fan Zhang, Nana Zhong, Kang Zhou, Jun Tang
{"title":"Genome sequence resources for three strains of the genus Clonostachys.","authors":"Zongping Sun, Fan Zhang, Nana Zhong, Kang Zhou, Jun Tang","doi":"10.1186/s12863-025-01297-3","DOIUrl":null,"url":null,"abstract":"<p><strong>Objective: </strong>Clonostachys, a genus with rich morphological and ecological diversity in Bionectriaceae, has a wide distribution among diverse habitats. Several studies have reported Clonostachys fungi as effective biological agents against multiple fungal plant pathogens. To clarify the diversity and biocontrol mechanisms of the Clonostachys fungi, this study was undertaken to sequence and assemble the genomes of two C. chloroleuca and one C. rhizophaga.</p><p><strong>Data description: </strong>Here, we performed genomic sequencing of three strains of genus Clonostachys collected from the China General Microbiological Culture Collection Center (CGMCC) using Illumina HiSeq 2500 sequencing technology. Whole genome analysis indicated that their genomes consist of 58,484,224 bp with a GC content of 48.58%, 58,114,960 bp with a GC content of 47.74% and 58,450,453 bp with a GC content of 48.58%, respectively. BUSCO analysis of the genome assembly indicated that the completeness of these genomes was at least 98%. In summary, these datasets provide a valuable resource for ongoing studies that include further exploration of biological function, marker development, enhanced biological control ability of Clonostachys fungi, and population diversity.</p>","PeriodicalId":72427,"journal":{"name":"BMC genomic data","volume":"26 1","pages":"8"},"PeriodicalIF":2.5000,"publicationDate":"2025-01-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11758714/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"BMC genomic data","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1186/s12863-025-01297-3","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0

Abstract

Objective: Clonostachys, a genus with rich morphological and ecological diversity in Bionectriaceae, has a wide distribution among diverse habitats. Several studies have reported Clonostachys fungi as effective biological agents against multiple fungal plant pathogens. To clarify the diversity and biocontrol mechanisms of the Clonostachys fungi, this study was undertaken to sequence and assemble the genomes of two C. chloroleuca and one C. rhizophaga.

Data description: Here, we performed genomic sequencing of three strains of genus Clonostachys collected from the China General Microbiological Culture Collection Center (CGMCC) using Illumina HiSeq 2500 sequencing technology. Whole genome analysis indicated that their genomes consist of 58,484,224 bp with a GC content of 48.58%, 58,114,960 bp with a GC content of 47.74% and 58,450,453 bp with a GC content of 48.58%, respectively. BUSCO analysis of the genome assembly indicated that the completeness of these genomes was at least 98%. In summary, these datasets provide a valuable resource for ongoing studies that include further exploration of biological function, marker development, enhanced biological control ability of Clonostachys fungi, and population diversity.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
龙葵属三株基因组序列资源。
目的:龙葵属(Clonostachys)是龙葵科(Bionectriaceae)中具有丰富形态和生态多样性的属,分布广泛,生境多样。一些研究报道了cloonostachys真菌是对抗多种真菌植物病原体的有效生物制剂。为了进一步阐明该真菌的多样性及其生物防治机制,本研究对两种绿绿C.和一种根食C.进行了基因组测序和组装。数据描述:本研究采用Illumina HiSeq 2500测序技术对中国普通微生物培养收集中心(CGMCC)收集的3株Clonostachys属进行了基因组测序。全基因组分析表明,它们的基因组长度分别为58,484,224 bp, GC含量为48.58%;58,114,960 bp, GC含量为47.74%;58,450,453 bp, GC含量为48.58%。基因组组装的BUSCO分析表明这些基因组的完整性至少为98%。总之,这些数据集为正在进行的研究提供了宝贵的资源,包括进一步探索Clonostachys真菌的生物学功能、标志物开发、增强生物控制能力和种群多样性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
CiteScore
4.90
自引率
0.00%
发文量
0
期刊最新文献
Preliminary genomic assessment of invasive Streptococcus pneumoniae serotype 3 isolates in Malaysia. Genome-wide identification of ADK gene family associated with heat stress tolerance in chili (Capsicum annuum L.). KORE-Map 1.1: Korean medicine omics resource extension map on transcriptome data of dyspepsia herbal medicine. Whole genome sequencing of 18 economically important aphid pests with photographic vouchers for taxonomic validation. Development and validation of high-density SNP array for genomic studies in Indian yak populations.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1