TSPE: Reconstruction of multi-morphological tumors of NIR-II fluorescence molecular tomography based on positional encoding

IF 4.8 2区 医学 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Computer methods and programs in biomedicine Pub Date : 2025-04-01 Epub Date: 2025-01-23 DOI:10.1016/j.cmpb.2024.108554
Keyi Han , Chunzhao Li , Anqi Xiao , Yaqi Tian , Jie Tian , Zhenhua Hu
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Abstract

Background and Objective

Fluorescence molecular tomography (FMT) is a noninvasive and highly sensitive imaging modality, which can display 3D visualization of tumors by reconstructing fluorescence probes’ distribution. However, existing methods mostly ignore positional information, which includes spatial structure information crucial for the reconstruction of light sources. This limits the reconstruction accuracy of light sources with multiple morphologies. Therefore, to our best knowledge, we for the first time integrated positional encoding into the FMT task, enabling the incorporation of high-frequency spatial structure information.

Methods

We proposed a three-stage network embedded with a positional encoding module (TSPE) to perform high reconstruction accuracy of tumors with multiple morphologies. Additionally, our study focused on NIR-II which had less severe scattering problems and higher imaging accuracy than NIR-I.

Results

The simulation experiments demonstrated that TSPE achieved high reconstruction accuracy in NIR-II FMT, with the barycenter error (BCE) for single-tumor reconstruction reaching 0.18 mm, representing a 14 % reduction compared to other methods. TSPE more accurately distinguished adjacent multi-morphological tumors with a minimal edge-to-edge distance (EED) of 0.3 mm. In vivo experiments also showed that TSPE could achieve more accurate reconstruction of tumors compared with other methods.

Conclusions

The proposed method can achieve the best reconstruction performance. It has potential to promote the development of NIR-II FMT and its preclinical application.
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TSPE:基于位置编码的NIR-II荧光分子断层扫描多形态肿瘤重建。
背景与目的:荧光分子断层扫描(FMT)是一种无创、高灵敏度的成像方式,通过重建荧光探针的分布,可以显示肿瘤的三维可视化。然而,现有的方法大多忽略了位置信息,其中包括对光源重建至关重要的空间结构信息。这限制了多形态光源的重建精度。因此,据我们所知,我们首次将位置编码集成到FMT任务中,使高频空间结构信息得以融合。方法:我们提出了一种嵌入位置编码模块(TSPE)的三级网络,以实现具有多种形态的肿瘤的高重建精度。此外,我们的研究重点是NIR-II,它比NIR-I散射问题更小,成像精度更高。结果:模拟实验表明,TSPE在NIR-II FMT中获得了较高的重建精度,单个肿瘤重建的重心误差(BCE)达到0.18 mm,比其他方法降低了14%。TSPE能更准确地识别邻近的多形态肿瘤,最小边缘到边缘距离(EED)为0.3 mm。体内实验也表明,与其他方法相比,TSPE可以实现更精确的肿瘤重建。结论:该方法具有较好的重建效果。具有促进NIR-II FMT的发展和临床前应用的潜力。
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来源期刊
Computer methods and programs in biomedicine
Computer methods and programs in biomedicine 工程技术-工程:生物医学
CiteScore
12.30
自引率
6.60%
发文量
601
审稿时长
135 days
期刊介绍: To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine. Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.
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