A novel decomposer-exploiter interaction framework of plant residue microbial decomposition

IF 10.1 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Genome Biology Pub Date : 2025-02-03 DOI:10.1186/s13059-025-03486-w
Youzhi Miao, Wei Wang, Huanhuan Xu, Yanwei Xia, Qingxin Gong, Zhihui Xu, Nan Zhang, Weibing Xun, Qirong Shen, Ruifu Zhang
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Abstract

Plant residue microbial decomposition, subject to significant environmental regulation, represents a crucial ecological process shaping and cycling the largest terrestrial soil organic carbon pool. However, the fundamental understanding of the functional dynamics and interactions between the principal participants, fungi and bacteria, in natural habitats remains limited. In this study, the evolution of fungal and bacterial communities and their functional interactions were elucidated during the degradation of complexity-gradient plant residues. The results reveal that with increasing residue complexity, fungi exhibit heightened adaptability, while bacterial richness declines sharply. The differential functional evolution of fungi and bacteria is driven by residue complexity but follows distinct trajectories. Fundamentally, fungi evolve towards promoting plant residue degradation and so consistently act as the dominant decomposers. Conversely, bacteria predominantly increase expression of genes of glycosidases to exploit fungal degradation products, thereby consistently acting as exploiters. The presence of fungi enables and endures bacterial exploitation. This study introduces a novel framework of fungal decomposers and bacterial exploiters during plant residue microbial decomposition, advancing our comprehensive understanding of microbial processes governing the organic carbon cycling.
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植物残茬微生物分解的分解者-剥削者交互作用框架
植物残体微生物分解是形成和循环陆地最大土壤有机碳库的重要生态过程,受重要的环境调控。然而,对自然生境中主要参与者真菌和细菌之间的功能动力学和相互作用的基本理解仍然有限。在这项研究中,真菌和细菌群落的演变及其功能相互作用的复杂性梯度植物残留物的降解过程中阐明。结果表明,随着残留物复杂性的增加,真菌的适应性增强,而细菌丰富度急剧下降。真菌和细菌的不同功能进化是由残基复杂性驱动的,但遵循不同的轨迹。从根本上说,真菌朝着促进植物残留物降解的方向进化,因此始终作为主要的分解者。相反,细菌主要增加糖苷酶基因的表达来利用真菌降解产物,从而始终充当剥削者。真菌的存在使细菌得以利用,也经受住了细菌的利用。本研究引入了植物残渣微生物分解过程中真菌分解者和细菌利用者的新框架,促进了我们对有机碳循环的微生物过程的全面理解。
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来源期刊
Genome Biology
Genome Biology Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
21.00
自引率
3.30%
发文量
241
审稿时长
2 months
期刊介绍: Genome Biology stands as a premier platform for exceptional research across all domains of biology and biomedicine, explored through a genomic and post-genomic lens. With an impressive impact factor of 12.3 (2022),* the journal secures its position as the 3rd-ranked research journal in the Genetics and Heredity category and the 2nd-ranked research journal in the Biotechnology and Applied Microbiology category by Thomson Reuters. Notably, Genome Biology holds the distinction of being the highest-ranked open-access journal in this category. Our dedicated team of highly trained in-house Editors collaborates closely with our esteemed Editorial Board of international experts, ensuring the journal remains on the forefront of scientific advances and community standards. Regular engagement with researchers at conferences and institute visits underscores our commitment to staying abreast of the latest developments in the field.
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