{"title":"pyMechOpt: A Python toolbox for optimizing of reaction mechanisms","authors":"Sihan Di, Nanjia Yu, Shutao Han, Haodong He","doi":"10.1016/j.softx.2024.102001","DOIUrl":null,"url":null,"abstract":"<div><div>This paper introduces pyMechOpt, an open-source Python package designed for the optimization of chemical reaction mechanisms. The package implements a range of optimization methods, including conventional algorithms such as genetic algorithms (GA) and particle swarm optimization (PSO), as well as introducing novel methods such as coordinate descent (CD) and multi-objective optimization algorithms. The optimization of a reduced GRI-Mech 3.0 mechanism for methane combustion is used to demonstrate the capabilities of pyMechOpt. The SILSCD method demonstrated a notable reduction in the objective functions, exceeding the capabilities of other methods. In the context of multi-objective optimization, NSGA-III demonstrated a balanced Pareto front, outperforming both CTAEA and MOEAD. These results serve to illustrate the efficacy of the novel methods implemented in pyMechOpt. The package provides a versatile platform for researchers to customize optimization algorithms and objective functions, supporting detailed analysis of results. This package makes a contribution to the field by introducing innovative optimization methods and a comprehensive software tool for refining chemical reaction mechanisms.</div></div>","PeriodicalId":21905,"journal":{"name":"SoftwareX","volume":"29 ","pages":"Article 102001"},"PeriodicalIF":2.4000,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"SoftwareX","FirstCategoryId":"94","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2352711024003716","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"COMPUTER SCIENCE, SOFTWARE ENGINEERING","Score":null,"Total":0}
引用次数: 0
Abstract
This paper introduces pyMechOpt, an open-source Python package designed for the optimization of chemical reaction mechanisms. The package implements a range of optimization methods, including conventional algorithms such as genetic algorithms (GA) and particle swarm optimization (PSO), as well as introducing novel methods such as coordinate descent (CD) and multi-objective optimization algorithms. The optimization of a reduced GRI-Mech 3.0 mechanism for methane combustion is used to demonstrate the capabilities of pyMechOpt. The SILSCD method demonstrated a notable reduction in the objective functions, exceeding the capabilities of other methods. In the context of multi-objective optimization, NSGA-III demonstrated a balanced Pareto front, outperforming both CTAEA and MOEAD. These results serve to illustrate the efficacy of the novel methods implemented in pyMechOpt. The package provides a versatile platform for researchers to customize optimization algorithms and objective functions, supporting detailed analysis of results. This package makes a contribution to the field by introducing innovative optimization methods and a comprehensive software tool for refining chemical reaction mechanisms.
期刊介绍:
SoftwareX aims to acknowledge the impact of software on today''s research practice, and on new scientific discoveries in almost all research domains. SoftwareX also aims to stress the importance of the software developers who are, in part, responsible for this impact. To this end, SoftwareX aims to support publication of research software in such a way that: The software is given a stamp of scientific relevance, and provided with a peer-reviewed recognition of scientific impact; The software developers are given the credits they deserve; The software is citable, allowing traditional metrics of scientific excellence to apply; The academic career paths of software developers are supported rather than hindered; The software is publicly available for inspection, validation, and re-use. Above all, SoftwareX aims to inform researchers about software applications, tools and libraries with a (proven) potential to impact the process of scientific discovery in various domains. The journal is multidisciplinary and accepts submissions from within and across subject domains such as those represented within the broad thematic areas below: Mathematical and Physical Sciences; Environmental Sciences; Medical and Biological Sciences; Humanities, Arts and Social Sciences. Originating from these broad thematic areas, the journal also welcomes submissions of software that works in cross cutting thematic areas, such as citizen science, cybersecurity, digital economy, energy, global resource stewardship, health and wellbeing, etcetera. SoftwareX specifically aims to accept submissions representing domain-independent software that may impact more than one research domain.