Multi-level Monte Carlo methods in chemical applications with Lennard-Jones potentials and other landscapes with isolated singularities

IF 3.4 2区 物理与天体物理 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Computer Physics Communications Pub Date : 2025-04-01 Epub Date: 2024-12-30 DOI:10.1016/j.cpc.2024.109477
Alberto Bocchinfuso, David M. Rogers, Caio Alves, Jorge Ramirez, Dilipkumar N. Asthagiri, Thomas L. Beck, Juan M. Restrepo
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Abstract

We describe and compare outcomes of various Multi-Level Monte Carlo (MLMC) method variants, motivated by the potential of improved computational efficiency over rejection based Monte Carlo, which scales poorly with problem dimension. With an eye toward its application to computational chemical physics, we test MLMC's ability to sample trajectories on two problems — a familiar double-well potential, with known stationary distributions, and a Lennard-Jones solid potential (a Galton Board). By sampling Brownian motion trajectories, we are able to compute expectations of observable averages. These multi-basin potential energy problems capture the essence of the challenges with using MLMC, namely, maintaining correspondence of sample paths as time-resolution is varied. Addressing this challenge properly can lead to MLMC significantly outperforming standard Monte Carlo path sampling. We describe the essence of this problem and suggest strategies that circumvent diverging multilevel sample paths for an important class of problems. In the tests we also compare the computational cost of several, “adaptive,” variants of MLMC. Our results demonstrate that MLMC overcomes the collision, time scale limitation of the more familiar Brownian path MC samplers, and our implementation provides tunable error thresholds, making MLMC a promising candidate for application to larger and more complex molecular systems.
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具有Lennard-Jones势和具有孤立奇点的其他景观的化学应用中的多级蒙特卡罗方法
我们描述并比较了各种多层次蒙特卡罗(MLMC)方法变体的结果,这些变体的动机是基于蒙特卡罗方法的计算效率提高的潜力,而基于蒙特卡罗方法在问题维度上的可扩展性很差。着眼于其在计算化学物理中的应用,我们测试了MLMC在两个问题上采样轨迹的能力,一个是熟悉的双阱势,已知的平稳分布,另一个是Lennard-Jones固体势(Galton Board)。通过对布朗运动轨迹取样,我们能够计算可观测平均值的期望。这些多流域势能问题抓住了使用MLMC挑战的本质,即在时间分辨率变化时保持样本路径的对应性。正确解决这一挑战可以使MLMC显著优于标准蒙特卡罗路径采样。我们描述了这个问题的本质,并为一类重要的问题提出了规避发散的多层样本路径的策略。在测试中,我们还比较了几种“自适应”的MLMC变体的计算成本。我们的研究结果表明,MLMC克服了更常见的布朗路径MC采样器的碰撞、时间尺度限制,并且我们的实现提供了可调的误差阈值,使MLMC有希望应用于更大、更复杂的分子系统。
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来源期刊
Computer Physics Communications
Computer Physics Communications 物理-计算机:跨学科应用
CiteScore
12.10
自引率
3.20%
发文量
287
审稿时长
5.3 months
期刊介绍: The focus of CPC is on contemporary computational methods and techniques and their implementation, the effectiveness of which will normally be evidenced by the author(s) within the context of a substantive problem in physics. Within this setting CPC publishes two types of paper. Computer Programs in Physics (CPiP) These papers describe significant computer programs to be archived in the CPC Program Library which is held in the Mendeley Data repository. The submitted software must be covered by an approved open source licence. Papers and associated computer programs that address a problem of contemporary interest in physics that cannot be solved by current software are particularly encouraged. Computational Physics Papers (CP) These are research papers in, but are not limited to, the following themes across computational physics and related disciplines. mathematical and numerical methods and algorithms; computational models including those associated with the design, control and analysis of experiments; and algebraic computation. Each will normally include software implementation and performance details. The software implementation should, ideally, be available via GitHub, Zenodo or an institutional repository.In addition, research papers on the impact of advanced computer architecture and special purpose computers on computing in the physical sciences and software topics related to, and of importance in, the physical sciences may be considered.
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