pCI: A parallel configuration interaction software package for high-precision atomic structure calculations

IF 7.2 2区 物理与天体物理 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Computer Physics Communications Pub Date : 2024-12-06 DOI:10.1016/j.cpc.2024.109463
Charles Cheung , Mikhail G. Kozlov , Sergey G. Porsev , Marianna S. Safronova , Ilya I. Tupitsyn , Andrey I. Bondarev
{"title":"pCI: A parallel configuration interaction software package for high-precision atomic structure calculations","authors":"Charles Cheung ,&nbsp;Mikhail G. Kozlov ,&nbsp;Sergey G. Porsev ,&nbsp;Marianna S. Safronova ,&nbsp;Ilya I. Tupitsyn ,&nbsp;Andrey I. Bondarev","doi":"10.1016/j.cpc.2024.109463","DOIUrl":null,"url":null,"abstract":"<div><div>We introduce the pCI software package for high-precision atomic structure calculations. The standard method of calculation is based on the configuration interaction (CI) method to describe valence correlations, but can be extended to attain better accuracy by including core correlations via many-body perturbation theory (CI+MBPT) or the all-order (CI+all-order) method. The software package enables calculations of atomic properties, including energy levels, <em>g</em>-factors, hyperfine structure constants, multipole transition matrix elements, polarizabilities, and isotope shifts. It also features modern high-performance computing paradigms, including dynamic memory allocations and large-scale parallelization via the message-passing interface, to optimize and accelerate computations. To improve accuracy of the calculations, we include a supplementary program package to calculate QED corrections via a variant of QEDMOD, as well as a package to include core correlations.</div></div><div><h3>Program summary</h3><div><em>Program Title:</em> pCI</div><div><em>CPC Library link to program files:</em> <span><span>https://doi.org/10.17632/2kn5npnxj7.1</span><svg><path></path></svg></span></div><div><em>Developer's repository link:</em> <span><span>https://github.com/ud-pci/pCI</span><svg><path></path></svg></span></div><div><em>Licensing provisions:</em> GPLv3</div><div><em>Programming language:</em> Fortran</div><div><em>Supplementary material:</em> Documentation available at <span><span>https://pci.readthedocs.io</span><svg><path></path></svg></span></div><div><em>Nature of problem:</em> Calculation of atomic and ionic properties, including energy levels, hyperfine structure constants, multipole transition matrix elements, and polarizabilities.</div><div><em>Solution method:</em> The software package calculates energies and associated wave functions for the desired atomic states using the configuration interaction method. Using calculated wave functions, different atomic properties can be obtained, including <em>g</em>-factors, hyperfine structure constants, multipole transition amplitudes, polarizabilities, and others.</div><div><em>Additional comments including restrictions and unusual features:</em> All serial programs have been compiled and tested with the freely available Intel Fortran compilers “ifx” and “ifort”, and all parallel programs with the OpenMPI wrapper “mpifort” for Intel Fortran compilers.</div><div>One-electron orbitals outside the nucleus are defined on the radial grid points. Inside the nucleus, they are described in a Taylor expansion over <span><math><mi>r</mi><mo>/</mo><mi>R</mi></math></span>, where <em>R</em> is the nuclear radius.</div><div>This software package is not designed for calculations of high Rydberg states and continuous spectrum. The parallel programs are intended to be run on large computing clusters.</div></div><div><h3>References</h3><div><ul><li><span>[1]</span><span><div>M.G. Kozlov et al., Comput. Phys. Commun. 195 (2015) 199.</div></span></li></ul></div></div>","PeriodicalId":285,"journal":{"name":"Computer Physics Communications","volume":"308 ","pages":"Article 109463"},"PeriodicalIF":7.2000,"publicationDate":"2024-12-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer Physics Communications","FirstCategoryId":"101","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0010465524003862","RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0

Abstract

We introduce the pCI software package for high-precision atomic structure calculations. The standard method of calculation is based on the configuration interaction (CI) method to describe valence correlations, but can be extended to attain better accuracy by including core correlations via many-body perturbation theory (CI+MBPT) or the all-order (CI+all-order) method. The software package enables calculations of atomic properties, including energy levels, g-factors, hyperfine structure constants, multipole transition matrix elements, polarizabilities, and isotope shifts. It also features modern high-performance computing paradigms, including dynamic memory allocations and large-scale parallelization via the message-passing interface, to optimize and accelerate computations. To improve accuracy of the calculations, we include a supplementary program package to calculate QED corrections via a variant of QEDMOD, as well as a package to include core correlations.

Program summary

Program Title: pCI
CPC Library link to program files: https://doi.org/10.17632/2kn5npnxj7.1
Developer's repository link: https://github.com/ud-pci/pCI
Licensing provisions: GPLv3
Programming language: Fortran
Supplementary material: Documentation available at https://pci.readthedocs.io
Nature of problem: Calculation of atomic and ionic properties, including energy levels, hyperfine structure constants, multipole transition matrix elements, and polarizabilities.
Solution method: The software package calculates energies and associated wave functions for the desired atomic states using the configuration interaction method. Using calculated wave functions, different atomic properties can be obtained, including g-factors, hyperfine structure constants, multipole transition amplitudes, polarizabilities, and others.
Additional comments including restrictions and unusual features: All serial programs have been compiled and tested with the freely available Intel Fortran compilers “ifx” and “ifort”, and all parallel programs with the OpenMPI wrapper “mpifort” for Intel Fortran compilers.
One-electron orbitals outside the nucleus are defined on the radial grid points. Inside the nucleus, they are described in a Taylor expansion over r/R, where R is the nuclear radius.
This software package is not designed for calculations of high Rydberg states and continuous spectrum. The parallel programs are intended to be run on large computing clusters.

References

  • [1]
    M.G. Kozlov et al., Comput. Phys. Commun. 195 (2015) 199.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
求助全文
约1分钟内获得全文 去求助
来源期刊
Computer Physics Communications
Computer Physics Communications 物理-计算机:跨学科应用
CiteScore
12.10
自引率
3.20%
发文量
287
审稿时长
5.3 months
期刊介绍: The focus of CPC is on contemporary computational methods and techniques and their implementation, the effectiveness of which will normally be evidenced by the author(s) within the context of a substantive problem in physics. Within this setting CPC publishes two types of paper. Computer Programs in Physics (CPiP) These papers describe significant computer programs to be archived in the CPC Program Library which is held in the Mendeley Data repository. The submitted software must be covered by an approved open source licence. Papers and associated computer programs that address a problem of contemporary interest in physics that cannot be solved by current software are particularly encouraged. Computational Physics Papers (CP) These are research papers in, but are not limited to, the following themes across computational physics and related disciplines. mathematical and numerical methods and algorithms; computational models including those associated with the design, control and analysis of experiments; and algebraic computation. Each will normally include software implementation and performance details. The software implementation should, ideally, be available via GitHub, Zenodo or an institutional repository.In addition, research papers on the impact of advanced computer architecture and special purpose computers on computing in the physical sciences and software topics related to, and of importance in, the physical sciences may be considered.
期刊最新文献
Galactic distribution of supernovae and OB associations ToMSGKpoint: A user-friendly package for computing symmetry transformation properties of electronic eigenstates of nonmagnetic and magnetic crystalline materials curvedSpaceSim: A framework for simulating particles interacting along geodesics JAX-based aeroelastic simulation engine for differentiable aircraft dynamics CaLES: A GPU-accelerated solver for large-eddy simulation of wall-bounded flows
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1