{"title":"MADWAVE3: A quantum time dependent wave packet code for nonadiabatic state-to-state reaction dynamics of triatomic systems","authors":"Octavio Roncero , Pablo del Mazo-Sevillano","doi":"10.1016/j.cpc.2024.109471","DOIUrl":null,"url":null,"abstract":"<div><div>We present MADWAVE3, a FORTRAN90 code designed for quantum time-dependent wave packet propagation in triatomic systems. This program allows the calculation of state-to-state probabilities for inelastic and reactive collisions, as well as photodissociation processes, over one or multiple coupled diabatic electronic states. The code is highly parallelized using MPI and OpenMP. The execution requires the potential energy surfaces of the different electronic states involved, as well as the transition dipole moments for photodissociation processes. The formalism underlying the code is presented in section <span><span>2</span></span>, together with the modular structure of the code. This is followed by the installation procedures and a comprehensive list and explanation of the parameters that control the code, organized within their respective namelists.</div><div>Finally, a case study is presented, focusing on the prototypical reactive collision H+DH(<span><math><mi>v</mi><mo>,</mo><mi>j</mi></math></span>)→ H<sub>2</sub>(<span><math><msup><mrow><mi>v</mi></mrow><mrow><mo>′</mo></mrow></msup><mo>,</mo><msup><mrow><mi>j</mi></mrow><mrow><mo>′</mo></mrow></msup></math></span>) + D. Both the potential energy surface and the input files required to reproduce the calculation are provided and are available on the repository's main page. This example is used to study the parallelization speedup of the code.</div></div><div><h3>Program summary</h3><div><em>Program Title:</em> MADWAVE3</div><div><em>CPC Library link to program files:</em> <span><span>https://doi.org/10.17632/jv4wj2w23x.1</span><svg><path></path></svg></span></div><div><em>Developer's repository link:</em> <span><span>https://github.com/qmolastro/madwave3</span><svg><path></path></svg></span></div><div><em>Licensing provisions:</em> GPLv3</div><div><em>Programming language:</em> Fortran 90</div><div><em>External libraries:</em> FFTW3, MPI</div><div><em>Nature of problem:</em> Quantum time propagation of a wave packet describing a reactive process in a triatomic systems, for collisions (inelastic and reactive) and photodissociation processes, and considering several coupled diabatic electronic state</div><div><em>Solution method:</em> A modified Chebyshev propagator is used, keeping the real Chebyshev components, which are represented in grids for the internal Jacobi coordinates <span><math><mi>r</mi><mo>,</mo><mi>R</mi></math></span> and <em>γ</em> and in a basis for electronic and helicity components. The potential represented in a grid as well as the reactants and products wave functions are previously calculated in a preparatory stage.</div></div>","PeriodicalId":285,"journal":{"name":"Computer Physics Communications","volume":"308 ","pages":"Article 109471"},"PeriodicalIF":7.2000,"publicationDate":"2024-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer Physics Communications","FirstCategoryId":"101","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0010465524003941","RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0
Abstract
We present MADWAVE3, a FORTRAN90 code designed for quantum time-dependent wave packet propagation in triatomic systems. This program allows the calculation of state-to-state probabilities for inelastic and reactive collisions, as well as photodissociation processes, over one or multiple coupled diabatic electronic states. The code is highly parallelized using MPI and OpenMP. The execution requires the potential energy surfaces of the different electronic states involved, as well as the transition dipole moments for photodissociation processes. The formalism underlying the code is presented in section 2, together with the modular structure of the code. This is followed by the installation procedures and a comprehensive list and explanation of the parameters that control the code, organized within their respective namelists.
Finally, a case study is presented, focusing on the prototypical reactive collision H+DH()→ H2() + D. Both the potential energy surface and the input files required to reproduce the calculation are provided and are available on the repository's main page. This example is used to study the parallelization speedup of the code.
Program summary
Program Title: MADWAVE3
CPC Library link to program files:https://doi.org/10.17632/jv4wj2w23x.1
Nature of problem: Quantum time propagation of a wave packet describing a reactive process in a triatomic systems, for collisions (inelastic and reactive) and photodissociation processes, and considering several coupled diabatic electronic state
Solution method: A modified Chebyshev propagator is used, keeping the real Chebyshev components, which are represented in grids for the internal Jacobi coordinates and γ and in a basis for electronic and helicity components. The potential represented in a grid as well as the reactants and products wave functions are previously calculated in a preparatory stage.
期刊介绍:
The focus of CPC is on contemporary computational methods and techniques and their implementation, the effectiveness of which will normally be evidenced by the author(s) within the context of a substantive problem in physics. Within this setting CPC publishes two types of paper.
Computer Programs in Physics (CPiP)
These papers describe significant computer programs to be archived in the CPC Program Library which is held in the Mendeley Data repository. The submitted software must be covered by an approved open source licence. Papers and associated computer programs that address a problem of contemporary interest in physics that cannot be solved by current software are particularly encouraged.
Computational Physics Papers (CP)
These are research papers in, but are not limited to, the following themes across computational physics and related disciplines.
mathematical and numerical methods and algorithms;
computational models including those associated with the design, control and analysis of experiments; and
algebraic computation.
Each will normally include software implementation and performance details. The software implementation should, ideally, be available via GitHub, Zenodo or an institutional repository.In addition, research papers on the impact of advanced computer architecture and special purpose computers on computing in the physical sciences and software topics related to, and of importance in, the physical sciences may be considered.