Mathematical modeling of multicellular tumor spheroids quantifies inter-patient and intra-tumor heterogeneity.

IF 3.5 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY NPJ Systems Biology and Applications Pub Date : 2025-02-15 DOI:10.1038/s41540-025-00492-3
Adam A Malik, Kyle C Nguyen, John T Nardini, Cecilia C Krona, Kevin B Flores, Sven Nelander
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引用次数: 0

Abstract

In the study of brain tumors, patient-derived three-dimensional sphere cultures provide an important tool for studying emerging treatments. The growth of such spheroids depends on the combined effects of proliferation and migration of cells, but it is challenging to make accurate distinctions between increase in cell number versus the radial movement of cells. To address this, we formulate a novel model in the form of a system of two partial differential equations (PDEs) incorporating both migration and growth terms, and show that it more accurately fits our data compared to simpler PDE models. We show that traveling-wave speeds are strongly associated with population heterogeneity. Having fitted the model to our dataset we show that a subset of the cell lines are best described by a "Go-or-Grow"-type model, which constitutes a special case of our model. Finally, we investigate whether our fitted model parameters are correlated with patient age and survival.

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来源期刊
NPJ Systems Biology and Applications
NPJ Systems Biology and Applications Mathematics-Applied Mathematics
CiteScore
5.80
自引率
0.00%
发文量
46
审稿时长
8 weeks
期刊介绍: npj Systems Biology and Applications is an online Open Access journal dedicated to publishing the premier research that takes a systems-oriented approach. The journal aims to provide a forum for the presentation of articles that help define this nascent field, as well as those that apply the advances to wider fields. We encourage studies that integrate, or aid the integration of, data, analyses and insight from molecules to organisms and broader systems. Important areas of interest include not only fundamental biological systems and drug discovery, but also applications to health, medical practice and implementation, big data, biotechnology, food science, human behaviour, broader biological systems and industrial applications of systems biology. We encourage all approaches, including network biology, application of control theory to biological systems, computational modelling and analysis, comprehensive and/or high-content measurements, theoretical, analytical and computational studies of system-level properties of biological systems and computational/software/data platforms enabling such studies.
期刊最新文献
Cross-species transcriptomics translation reveals a role for the unfolded protein response in Mycobacterium tuberculosis infection. Deep learning for detecting and early predicting chronic obstructive pulmonary disease from spirogram time series. Mathematical modeling of multicellular tumor spheroids quantifies inter-patient and intra-tumor heterogeneity. Overall biomass yield on multiple nutrient sources. Modeling critical dosing strategies for stromal-induced resistance to cancer therapy.
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