Comparative mitogenomics of Cheiracanthium species (Araneae: Cheiracanthiidae) with phylogenetic implication and evolutionary insights.

IF 2.4 3区 生物学 Q2 MULTIDISCIPLINARY SCIENCES PeerJ Pub Date : 2025-02-14 eCollection Date: 2025-01-01 DOI:10.7717/peerj.18314
Zhaoyi Li, Feng Zhang
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Abstract

The genus Cheiracanthium C. L. Koch, 1839 is the most species-rich genus of the family Cheiracanthiidae. Given the unavailability of information on the evolutionary biology and molecular taxonomy of this genus, here we sequenced nine mitochondrial genomes (mitogenomes) of Cheiracanthium species, four of which were fully annotated, and conducted comparative analyses with other well-characterized Araneae mitogenomes. We also provide phylogenetic insights on the genus Cheiracanthium. The circular mitogenomes of the Cheiracanthium contain 37 genes, including 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs) and one putative control region (CR). All genes show a high A+T bias, characterized by a negative AT skew and positive GC skew, along with numerous overlapped regions and intergenic spacers. Approximately half of the tRNAs lack TΨC and/or dihydrouracil (DHU) arm and are characterized with unpaired amino acid acceptor arms. Most PCGs used the standard ATN start codons and TAR termination codons. The mitochondrial gene order of Cheiracanthium differs significantly from the putative ancestral gene order (Limulus polyphemus). Our novel phylogenetic analyses infer Cheiracanthiidae to be the sister group of Salticidae in BI analysis, but as sister to the node with Miturgidae, Viridasiidae, Corinnidae, Selenopidae, Salticidae, and Philodromidae in ML analysis. We confirm that Cheiracanthium is paraphyletic, for the first time using molecular phylogenetic approaches, with the earliest divergence estimated at 67 Ma. Our findings enhance our understanding of Cheiracanthium taxonomy and evolution.

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蛛形纲蛛形纲物种的比较有丝分裂基因组学及其系统发育意义和进化见解。
Cheiracanthium C. L. Koch, 1839是Cheiracanthium科中物种最丰富的属。考虑到信息的不可用这个属的进化生物学和分子分类,我们九个线粒体基因组测序(mitogenomes) Cheiracanthium物种,四是完全注释,并进行了比较分析与其他良好的蜘蛛类mitogenomes。我们还提供了对Cheiracanthium属的系统发育见解。金棘草的环状丝裂基因组包含37个基因,包括13个蛋白质编码基因(PCGs)、22个转移RNA基因(tRNAs)、2个核糖体RNA基因(rrna)和1个假定控制区(CR)。所有基因都表现出高的a +T偏倚,其特征是负AT偏和正GC偏,以及大量重叠区域和基因间间隔。大约一半的trna缺乏TΨC和/或二氢尿嘧啶(东华大学)臂,并且具有未配对的氨基酸受体臂。大多数PCGs使用标准的ATN起始密码子和TAR终止密码子。cheiracanthum的线粒体基因序列与假定的祖先基因序列(Limulus polyphemus)有显著差异。我们新的系统发育分析推断,在BI分析中,Cheiracanthiidae是Salticidae的姐妹类群,但在ML分析中,与Miturgidae, Viridasiidae, corinidae, Selenopidae, Salticidae和Philodromidae是姐妹类群。我们首次用分子系统发育方法证实了Cheiracanthium属副葡萄属,最早的分化时间估计为67 Ma。这一发现有助于我们对头棘纲的分类和进化的认识。
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PeerJ
PeerJ MULTIDISCIPLINARY SCIENCES-
CiteScore
4.70
自引率
3.70%
发文量
1665
审稿时长
10 weeks
期刊介绍: PeerJ is an open access peer-reviewed scientific journal covering research in the biological and medical sciences. At PeerJ, authors take out a lifetime publication plan (for as little as $99) which allows them to publish articles in the journal for free, forever. PeerJ has 5 Nobel Prize Winners on the Board; they have won several industry and media awards; and they are widely recognized as being one of the most interesting recent developments in academic publishing.
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