Design and evaluation of novel triazole derivatives as potential anti-gout inhibitors: a comprehensive molecular modeling study.

IF 3.8 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Frontiers in Chemistry Pub Date : 2025-03-06 eCollection Date: 2025-01-01 DOI:10.3389/fchem.2025.1518777
Mohammed Er-Rajy, Mohamed El Fadili, Sara Zarougui, Somdutt Mujwar, Mourad Aloui, Mohammed Zerrouk, Belkheir Hammouti, Larbi Rhazi, Rachid Sabbahi, Mohammed M Alanazi, Khalil Azzaoui, Rachid Salghi, Menana Elhallaoui
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Abstract

Introduction: Gout is the most common inflammatory arthritis, characterized by hyperuricemia, tophus formation, joint disease, and kidney stones. Uric acid, the final byproduct of purine catabolism, is eliminated via the kidneys and digestive system. Xanthine oxidase (XO) catalyzes the conversion of hypoxanthine and xanthine into uric acid, making XO inhibitors crucial for treating hyperuricemia and gout. Currently, three XO inhibitors are clinically used, showing significant efficacy. A molecular modeling study on triazole derivatives aims to identify novel XO inhibitors using 3D-QSAR, molecular docking, MD simulations, ADMET analysis, and DFT calculations. These computational approaches facilitate drug discovery while reducing research costs.

Methods: Our work focuses on a series of synthesized anti-xanthine oxidase inhibitors, aiming to develop new inhibitors. A computational study was carried out to identify the xanthine oxidase inhibitory structural features of a series of triazole inhibitors using computational method.

Results: A model based on CoMFA and CoMSIA/SEA has been built to predict new triazole derivatives.

Discussion: The optimal model established from CoMFA and CoMSIA/SEA was successfully evaluated for its predictive capability. Visualization of the contour maps of both models showed that modifying the substituents plays a key role in enhancing the biological activity of anti-gout inhibitors. Molecular docking results for complexes N°8-3NVY and N°22-3NVY showed scores of -7.22 kcal/mol and -8.36 kcal/mol, respectively, indicating substantial affinity for the enzyme. Complex N°8-3NVY forms two hydrogen bonds with SER 69 and ASN 71, three alkyl bonds with ALA 70, LEU 74, and ALA 75, and one Pi-Pi T-shaped bond with PHE 68. Complex N°22-3NVY forms three hydrogen bonds with HIS 99, ARG 29, and ILE 91, and one halogen bond with LEU 128 at 3.60 Å. A MD study revealed that the N°22-3NVY complex remained highly stable throughout the simulation. Therefore, we proposed six new molecules, their anti-gout inhibitory activities were predicted using two models, and they were evaluated for Lipinski's rule, and ADMET properties. The results show that both Pred 4 and Pred 5 have better pharmacokinetic properties than the height potent molecule in the studied series, making these two compounds valuable candidates for new anti-gout drugs. Subsequently, using DFT study to evaluate the chemical reactivity properties of these two proposed compounds, the energy gap results revealed that both molecules exhibit moderate chemical stability and reactivity.

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导言:痛风是最常见的炎症性关节炎,以高尿酸血症、脓肿形成、关节疾病和肾结石为特征。尿酸是嘌呤分解代谢的最终副产品,通过肾脏和消化系统排出体外。黄嘌呤氧化酶(XO)催化次黄嘌呤和黄嘌呤转化为尿酸,因此 XO 抑制剂对治疗高尿酸血症和痛风至关重要。目前,临床上使用的三种 XO 抑制剂显示出显著疗效。一项关于三唑衍生物的分子建模研究旨在利用三维-QSAR、分子对接、MD 模拟、ADMET 分析和 DFT 计算找出新型 XO 抑制剂。这些计算方法有助于药物发现,同时降低研究成本:我们的研究重点是一系列合成的抗黄嘌呤氧化酶抑制剂,旨在开发新的抑制剂。我们采用计算方法对一系列三唑类抑制剂进行了研究,以确定其抑制黄嘌呤氧化酶的结构特征:结果:建立了一个基于 CoMFA 和 CoMSIA/SEA 的模型来预测新的三唑衍生物:讨论:根据 CoMFA 和 CoMSIA/SEA 建立的最佳模型成功地评估了其预测能力。对这两个模型的等值线图的可视化显示,取代基的改变在提高抗痛风抑制剂的生物活性方面起着关键作用。N°8-3NVY和N°22-3NVY复合物的分子对接结果分别为-7.22 kcal/mol和-8.36 kcal/mol,表明它们与酶有很强的亲和力。复合物 N°8-3NVY 与 SER 69 和 ASN 71 形成两个氢键,与 ALA 70、LEU 74 和 ALA 75 形成三个烷基键,与 PHE 68 形成一个 Pi-Pi T 形键。MD 研究表明,N°22-3NVY 复合物在整个模拟过程中保持高度稳定。因此,我们提出了六个新分子,利用两个模型预测了它们的抗痛风抑制活性,并对它们进行了利宾斯基规则和 ADMET 特性评估。结果表明,Pred 4 和 Pred 5 的药代动力学性质均优于所研究系列中药效最高的分子,因此这两个化合物是抗痛风新药的重要候选化合物。随后,利用 DFT 研究评估了这两种拟议化合物的化学反应特性,能隙结果显示这两种分子都表现出适度的化学稳定性和反应性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Frontiers in Chemistry
Frontiers in Chemistry Chemistry-General Chemistry
CiteScore
8.50
自引率
3.60%
发文量
1540
审稿时长
12 weeks
期刊介绍: Frontiers in Chemistry is a high visiblity and quality journal, publishing rigorously peer-reviewed research across the chemical sciences. Field Chief Editor Steve Suib at the University of Connecticut is supported by an outstanding Editorial Board of international researchers. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to academics, industry leaders and the public worldwide. Chemistry is a branch of science that is linked to all other main fields of research. The omnipresence of Chemistry is apparent in our everyday lives from the electronic devices that we all use to communicate, to foods we eat, to our health and well-being, to the different forms of energy that we use. While there are many subtopics and specialties of Chemistry, the fundamental link in all these areas is how atoms, ions, and molecules come together and come apart in what some have come to call the “dance of life”. All specialty sections of Frontiers in Chemistry are open-access with the goal of publishing outstanding research publications, review articles, commentaries, and ideas about various aspects of Chemistry. The past forms of publication often have specific subdisciplines, most commonly of analytical, inorganic, organic and physical chemistries, but these days those lines and boxes are quite blurry and the silos of those disciplines appear to be eroding. Chemistry is important to both fundamental and applied areas of research and manufacturing, and indeed the outlines of academic versus industrial research are also often artificial. Collaborative research across all specialty areas of Chemistry is highly encouraged and supported as we move forward. These are exciting times and the field of Chemistry is an important and significant contributor to our collective knowledge.
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