A Bayesian mixture model for changepoint estimation using ordinal predictors.

IF 1.2 4区 数学 Q4 MATHEMATICAL & COMPUTATIONAL BIOLOGY International Journal of Biostatistics Pub Date : 2021-04-06 DOI:10.1515/ijb-2020-0151
Emily Roberts, Lili Zhao
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引用次数: 2

Abstract

In regression models, predictor variables with inherent ordering, such ECOG performance status or novel biomarker expression levels, are commonly seen in medical settings. Statistically, it may be difficult to determine the functional form of an ordinal predictor variable. Often, such a variable is dichotomized based on whether it is above or below a certain cutoff. Other methods conveniently treat the ordinal predictor as a continuous variable and assume a linear relationship with the outcome. However, arbitrarily choosing a method may lead to inaccurate inference and treatment. In this paper, we propose a Bayesian mixture model to consider both dichotomous and linear forms for the variable. This allows for simultaneous assessment of the appropriate form of the predictor in regression models by considering the presence of a changepoint through the lens of a threshold detection problem. This method is applicable to continuous, binary, and survival outcomes, and it is easily amenable to penalized regression. We evaluated the proposed method using simulation studies and apply it to two real datasets. We provide JAGS code for easy implementation.

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用有序预测量估计变点的贝叶斯混合模型。
在回归模型中,具有固有顺序的预测变量,如ECOG表现状态或新的生物标志物表达水平,在医疗环境中很常见。在统计上,可能很难确定有序预测变量的函数形式。通常,这样的变量是根据它是高于还是低于某个截止值来进行二分类的。其他方法方便地将有序预测器视为连续变量,并假设与结果呈线性关系。然而,任意选择一种方法可能导致不准确的推断和处理。在本文中,我们提出了一个贝叶斯混合模型来考虑变量的二分类和线性形式。这允许通过阈值检测问题来考虑变化点的存在,从而同时评估回归模型中预测器的适当形式。这种方法适用于连续的、二进制的和生存的结果,并且它很容易适应惩罚回归。我们通过模拟研究评估了所提出的方法,并将其应用于两个真实数据集。为了便于实现,我们提供了JAGS代码。
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来源期刊
International Journal of Biostatistics
International Journal of Biostatistics MATHEMATICAL & COMPUTATIONAL BIOLOGY-STATISTICS & PROBABILITY
CiteScore
2.10
自引率
8.30%
发文量
28
审稿时长
>12 weeks
期刊介绍: The International Journal of Biostatistics (IJB) seeks to publish new biostatistical models and methods, new statistical theory, as well as original applications of statistical methods, for important practical problems arising from the biological, medical, public health, and agricultural sciences with an emphasis on semiparametric methods. Given many alternatives to publish exist within biostatistics, IJB offers a place to publish for research in biostatistics focusing on modern methods, often based on machine-learning and other data-adaptive methodologies, as well as providing a unique reading experience that compels the author to be explicit about the statistical inference problem addressed by the paper. IJB is intended that the journal cover the entire range of biostatistics, from theoretical advances to relevant and sensible translations of a practical problem into a statistical framework. Electronic publication also allows for data and software code to be appended, and opens the door for reproducible research allowing readers to easily replicate analyses described in a paper. Both original research and review articles will be warmly received, as will articles applying sound statistical methods to practical problems.
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