A time-resolved experimental-mathematical model for predicting the response of glioma cells to single-dose radiation therapy.

IF 1.5 4区 生物学 Q4 CELL BIOLOGY Integrative Biology Pub Date : 2021-07-08 DOI:10.1093/intbio/zyab010
Junyan Liu, David A Hormuth, Tessa Davis, Jianchen Yang, Matthew T McKenna, Angela M Jarrett, Heiko Enderling, Amy Brock, Thomas E Yankeelov
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引用次数: 15

Abstract

Purpose: To develop and validate a mechanism-based, mathematical model that characterizes 9L and C6 glioma cells' temporal response to single-dose radiation therapy in vitro by explicitly incorporating time-dependent biological interactions with radiation.

Methods: We employed time-resolved microscopy to track the confluence of 9L and C6 glioma cells receiving radiation doses of 0, 2, 4, 6, 8, 10, 12, 14 or 16 Gy. DNA repair kinetics are measured by γH2AX expression via flow cytometry. The microscopy data (814 replicates for 9L, 540 replicates for C6 at various seeding densities receiving doses above) were divided into training (75%) and validation (25%) sets. A mechanistic model was developed, and model parameters were calibrated to the training data. The model was then used to predict the temporal dynamics of the validation set given the known initial confluences and doses. The predictions were compared to the corresponding dynamic microscopy data.

Results: For 9L, we obtained an average (± standard deviation, SD) Pearson correlation coefficient between the predicted and measured confluence of 0.87 ± 0.16, and an average (±SD) concordance correlation coefficient of 0.72 ± 0.28. For C6, we obtained an average (±SD) Pearson correlation coefficient of 0.90 ± 0.17, and an average (±SD) concordance correlation coefficient of 0.71 ± 0.24.

Conclusion: The proposed model can effectively predict the temporal development of 9L and C6 glioma cells in response to a range of single-fraction radiation doses. By developing a mechanism-based, mathematical model that can be populated with time-resolved data, we provide an experimental-mathematical framework that allows for quantitative investigation of cells' temporal response to radiation. Our approach provides two key advances: (i) a time-resolved, dynamic death rate with a clear biological interpretation, and (ii) accurate predictions over a wide range of cell seeding densities and radiation doses.

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预测神经胶质瘤细胞对单剂量放射治疗反应的时间分辨实验数学模型。
目的:建立并验证一个基于机制的数学模型,通过明确地将时间依赖性生物相互作用与辐射结合起来,表征9L和C6胶质瘤细胞对体外单剂量放射治疗的时间反应。方法:采用时间分辨显微镜观察9L和C6胶质瘤细胞在接受0、2、4、6、8、10、12、14和16 Gy辐射剂量时的汇合情况。流式细胞术检测DNA修复动力学,测定γ - h2ax表达。显微镜数据(9L 814个重复,C6 540个重复,不同播种密度接受以上剂量)分为训练组(75%)和验证组(25%)。建立了一个机械模型,并根据训练数据对模型参数进行了校正。然后,该模型用于预测给定已知初始汇合量和剂量的验证集的时间动态。将预测结果与相应的动态显微镜数据进行比较。结果:对于9L,我们获得预测与测量汇合量的平均(±标准差,SD) Pearson相关系数为0.87±0.16,平均(±SD)一致性相关系数为0.72±0.28。C6的平均(±SD) Pearson相关系数为0.90±0.17,平均(±SD)一致性相关系数为0.71±0.24。结论:该模型可有效预测9L和C6胶质瘤细胞在一定剂量单组分辐射下的时间发育。通过开发一个基于机制的数学模型,可以填充时间分辨数据,我们提供了一个实验数学框架,允许定量研究细胞对辐射的时间反应。我们的方法提供了两个关键的进步:(i)具有明确生物学解释的时间分辨的动态死亡率,以及(ii)对大范围细胞播种密度和辐射剂量的准确预测。
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来源期刊
Integrative Biology
Integrative Biology 生物-细胞生物学
CiteScore
4.90
自引率
0.00%
发文量
15
审稿时长
1 months
期刊介绍: Integrative Biology publishes original biological research based on innovative experimental and theoretical methodologies that answer biological questions. The journal is multi- and inter-disciplinary, calling upon expertise and technologies from the physical sciences, engineering, computation, imaging, and mathematics to address critical questions in biological systems. Research using experimental or computational quantitative technologies to characterise biological systems at the molecular, cellular, tissue and population levels is welcomed. Of particular interest are submissions contributing to quantitative understanding of how component properties at one level in the dimensional scale (nano to micro) determine system behaviour at a higher level of complexity. Studies of synthetic systems, whether used to elucidate fundamental principles of biological function or as the basis for novel applications are also of interest.
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