Species diversity, systematic revision and molecular phylogeny of Ganodermataceae (Polyporales, Basidiomycota) with an emphasis on Chinese collections.

IF 14.1 1区 生物学 Q1 MYCOLOGY Studies in Mycology Pub Date : 2022-07-01 Epub Date: 2022-05-20 DOI:10.3114/sim.2022.101.05
Y-F Sun, J-H Xing, X-L He, D-M Wu, C-G Song, S Liu, J Vlasák, G Gates, T B Gibertoni, B-K Cui
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In this work, taxonomic and phylogenetic studies on worldwide species of <i>Ganodermataceae</i> were carried out by morphological examination and molecular phylogenetic analyses inferred from six gene loci including the internal transcribed spacer regions (ITS), the large subunit of nuclear ribosomal RNA gene (nLSU), the second largest subunit of RNA polymerase II gene (<i>rpb2</i>), the translation elongation factor 1-α gene (<i>tef1</i>), the small subunit mitochondrial rRNA gene (mtSSU) and the small subunit nuclear ribosomal RNA gene (nSSU). A total of 1 382 sequences were used in the phylogenetic analyses, of which 817 were newly generated, including 132 sequences of ITS, 139 sequences of nLSU, 83 sequences of <i>rpb2</i>, 124 sequences of <i>tef1</i>, 150 sequences of mtSSU and 189 sequences of nSSU. The combined six-gene dataset included sequences from 391 specimens representing 146 taxa from <i>Ganodermataceae</i>. Based on morphological and phylogenetic analyses, 14 genera were confirmed in <i>Ganodermataceae</i>: <i>Amauroderma</i>, <i>Amaurodermellus</i>, <i>Cristataspora</i>, <i>Foraminispora</i>, <i>Furtadoella</i>, <i>Ganoderma</i>, <i>Haddowia</i>, <i>Humphreya</i>, <i>Magoderna</i>, <i>Neoganoderma</i>, <i>Sanguinoderma</i>, <i>Sinoganoderma</i>, <i>Tomophagus</i> and <i>Trachydermella</i>. Among these genera, <i>Neoganoderma gen. nov.</i> is proposed for <i>Ganoderma neurosporum</i>; <i>Sinoganoderma gen. nov.</i> is proposed for <i>Ganoderma shandongense</i>; <i>Furtadoella gen. nov.</i> is proposed to include taxa previously belonging to <i>Furtadoa</i> since <i>Furtadoa</i> is a homonym of a plant genus in the <i>Araceae</i>; <i>Trachydermella gen. nov.</i> is proposed to include <i>Trachyderma tsunodae</i> since <i>Trachyderma</i> is a homonym of a lichen genus in the <i>Pannariaceae</i>. Twenty-three new species, <i>viz</i>., <i>Ganoderma acaciicola</i>, <i>G. acontextum</i>, <i>G. alpinum</i>, <i>G. bubalinomarginatum</i>, <i>G. castaneum</i>, <i>G. chuxiongense</i>, <i>G. cocoicola</i>, <i>G. fallax</i>, <i>G. guangxiense</i>, <i>G. puerense</i>, <i>G. subangustisporum</i>, <i>G. subellipsoideum</i>, <i>G. subflexipes</i>, <i>G. sublobatum</i>, <i>G. tongshanense</i>, <i>G. yunlingense</i>, <i>Haddowia macropora</i>, <i>Sanguinoderma guangdongense</i>, <i>Sa. infundibulare</i>, <i>Sa. longistipitum</i>, <i>Sa. melanocarpum</i>, <i>Sa. microsporum</i> and <i>Sa. tricolor</i> are described. In addition, another 33 known species are also described in detail for comparison. Scanning electron micrographs of basidiospores of 10 genera in <i>Ganodermataceae</i> are provided. A key to the accepted genera of <i>Ganodermataceae</i> and keys to the accepted species of <i>Ganoderma</i>, <i>Haddowia</i>, <i>Humphreya</i>, <i>Magoderna</i>, <i>Sanguinoderma</i> and <i>Tomophagus</i> are also provided. In total, 278 species are accepted as members of <i>Ganodermataceae</i> including 59 species distributed in China. <b>Taxonomic novelties:</b> <b>New genera:</b> <i>Furtadoella</i> B.K. Cui & Y.F. Sun, <i>Neoganoderma</i> B.K. Cui & Y.F. Sun, <i>Sinoganoderma</i> B.K. Cui, J.H. Xing & Y.F. Sun and <i>Trachydermella</i> B.K. Cui & Y.F. Sun; <b>New species:</b> <i>Ganoderma acaciicola</i> B.K. Cui, J.H. Xing & Y.F. Sun, <i>G. acontextum</i> B.K. Cui, J.H. Xing & Vlasák, <i>G. alpinum</i> B.K. Cui, J.H. Xing & Y.F. Sun, <i>G. bubalinomarginatum</i> B.K. Cui, J.H. Xing & Y.F. Sun, <i>G. castaneum</i> B.K. Cui, J.H. Xing & Y.F. Sun, <i>G. chuxiongense</i> B.K. Cui, J.H. Xing & Y.F. Sun, <i>G. cocoicola</i> B.K. Cui, J.H. Xing & Y.F. Sun, <i>G. fallax</i> B.K. Cui, J.H. Xing & Vlasák, <i>G. guangxiense</i> B.K. Cui, J.H. Xing & Y.F. Sun, <i>G. puerense</i> B.K. Cui, J.H. Xing & Y.F. Sun, <i>G. subangustisporum</i> B.K. Cui, J.H. Xing & Y.F. Sun, <i>G. subellipsoideum</i> B.K. Cui, J.H. Xing & Y.F. Sun, <i>G. subflexipes</i> B.K. Cui, J.H. Xing & Y.F. Sun, <i>G. sublobatum</i> B.K. Cui, J.H. Xing & Y.F. Sun, <i>G. tongshanense</i> B.K. Cui, J.H. Xing & Y.F. Sun, <i>G. yunlingense</i> B.K. Cui, J.H. Xing & Y.F. Sun, <i>Haddowia macropora</i> B.K. Cui, Vlasák & Y.F. Sun, <i>Sanguinoderma guangdongense</i> B.K. Cui & Y.F. Sun, <i>Sa. infundibulare</i> B.K. Cui & Y.F. Sun, <i>Sa. longistipitum</i> B.K. Cui & Y.F. Sun, <i>Sa. melanocarpum</i> B.K. Cui & Y.F. Sun, <i>Sa. microsporum</i> B.K. Cui & Y.F. Sun and <i>Sa. tricolor</i> B.K. Cui & Y.F. Sun; <b>New combinations</b>: <i>Furtadoella biseptata</i> (Costa-Rezende <i>et al.</i>) B.K. Cui & Y.F. Sun, <i>Fu. brasiliensis</i> (Singer) B.K. Cui & Y.F. Sun, <i>Fu. corneri</i> (Gulaid & Ryvarden) B.K. Cui & Y.F. Sun, <i>Neoganoderma neurosporum</i> (J.S. Furtado) B.K. Cui & Y.F. Sun, <i>Sinoganoderma shandongense</i> (J.D. Zhao & L.W. Xu) B.K. Cui, J.H. Xing & Y.F. Sun and <i>Trachydermella tsunodae</i> (Yasuda ex Lloyd) B.K. Cui & Y.F. Sun. <b>Citation:</b> Sun Y-F, Xing J-H, He X-L, Wu D-M, Song C-G, Liu S, Vlasák J, Gates G, Gibertoni TB, Cui B-K (2022). Species diversity, systematic revision and molecular phylogeny of <i>Ganodermataceae</i> (<i>Polyporales</i>, <i>Basidiomycota</i>) with an emphasis on Chinese collections. <i>Studies in Mycology</i> <b>101</b>: 287-415. doi: 10.3114/sim.2022.101.05.</p>","PeriodicalId":22036,"journal":{"name":"Studies in Mycology","volume":"101 ","pages":"287-415"},"PeriodicalIF":14.1000,"publicationDate":"2022-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9365044/pdf/","citationCount":"26","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Studies in Mycology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3114/sim.2022.101.05","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2022/5/20 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"MYCOLOGY","Score":null,"Total":0}
引用次数: 26

Abstract

Ganodermataceae is one of the main families of macrofungi since species in the family are both ecologically and economically important. The double-walled basidiospores with ornamented endospore walls are the characteristic features of Ganodermataceae. It is a large and complex family; although many studies have focused on Ganodermataceae, the global diversity, geographic distribution, taxonomy and molecular phylogeny of Ganodermataceae still remained incompletely understood. In this work, taxonomic and phylogenetic studies on worldwide species of Ganodermataceae were carried out by morphological examination and molecular phylogenetic analyses inferred from six gene loci including the internal transcribed spacer regions (ITS), the large subunit of nuclear ribosomal RNA gene (nLSU), the second largest subunit of RNA polymerase II gene (rpb2), the translation elongation factor 1-α gene (tef1), the small subunit mitochondrial rRNA gene (mtSSU) and the small subunit nuclear ribosomal RNA gene (nSSU). A total of 1 382 sequences were used in the phylogenetic analyses, of which 817 were newly generated, including 132 sequences of ITS, 139 sequences of nLSU, 83 sequences of rpb2, 124 sequences of tef1, 150 sequences of mtSSU and 189 sequences of nSSU. The combined six-gene dataset included sequences from 391 specimens representing 146 taxa from Ganodermataceae. Based on morphological and phylogenetic analyses, 14 genera were confirmed in Ganodermataceae: Amauroderma, Amaurodermellus, Cristataspora, Foraminispora, Furtadoella, Ganoderma, Haddowia, Humphreya, Magoderna, Neoganoderma, Sanguinoderma, Sinoganoderma, Tomophagus and Trachydermella. Among these genera, Neoganoderma gen. nov. is proposed for Ganoderma neurosporum; Sinoganoderma gen. nov. is proposed for Ganoderma shandongense; Furtadoella gen. nov. is proposed to include taxa previously belonging to Furtadoa since Furtadoa is a homonym of a plant genus in the Araceae; Trachydermella gen. nov. is proposed to include Trachyderma tsunodae since Trachyderma is a homonym of a lichen genus in the Pannariaceae. Twenty-three new species, viz., Ganoderma acaciicola, G. acontextum, G. alpinum, G. bubalinomarginatum, G. castaneum, G. chuxiongense, G. cocoicola, G. fallax, G. guangxiense, G. puerense, G. subangustisporum, G. subellipsoideum, G. subflexipes, G. sublobatum, G. tongshanense, G. yunlingense, Haddowia macropora, Sanguinoderma guangdongense, Sa. infundibulare, Sa. longistipitum, Sa. melanocarpum, Sa. microsporum and Sa. tricolor are described. In addition, another 33 known species are also described in detail for comparison. Scanning electron micrographs of basidiospores of 10 genera in Ganodermataceae are provided. A key to the accepted genera of Ganodermataceae and keys to the accepted species of Ganoderma, Haddowia, Humphreya, Magoderna, Sanguinoderma and Tomophagus are also provided. In total, 278 species are accepted as members of Ganodermataceae including 59 species distributed in China. Taxonomic novelties: New genera: Furtadoella B.K. Cui & Y.F. Sun, Neoganoderma B.K. Cui & Y.F. Sun, Sinoganoderma B.K. Cui, J.H. Xing & Y.F. Sun and Trachydermella B.K. Cui & Y.F. Sun; New species: Ganoderma acaciicola B.K. Cui, J.H. Xing & Y.F. Sun, G. acontextum B.K. Cui, J.H. Xing & Vlasák, G. alpinum B.K. Cui, J.H. Xing & Y.F. Sun, G. bubalinomarginatum B.K. Cui, J.H. Xing & Y.F. Sun, G. castaneum B.K. Cui, J.H. Xing & Y.F. Sun, G. chuxiongense B.K. Cui, J.H. Xing & Y.F. Sun, G. cocoicola B.K. Cui, J.H. Xing & Y.F. Sun, G. fallax B.K. Cui, J.H. Xing & Vlasák, G. guangxiense B.K. Cui, J.H. Xing & Y.F. Sun, G. puerense B.K. Cui, J.H. Xing & Y.F. Sun, G. subangustisporum B.K. Cui, J.H. Xing & Y.F. Sun, G. subellipsoideum B.K. Cui, J.H. Xing & Y.F. Sun, G. subflexipes B.K. Cui, J.H. Xing & Y.F. Sun, G. sublobatum B.K. Cui, J.H. Xing & Y.F. Sun, G. tongshanense B.K. Cui, J.H. Xing & Y.F. Sun, G. yunlingense B.K. Cui, J.H. Xing & Y.F. Sun, Haddowia macropora B.K. Cui, Vlasák & Y.F. Sun, Sanguinoderma guangdongense B.K. Cui & Y.F. Sun, Sa. infundibulare B.K. Cui & Y.F. Sun, Sa. longistipitum B.K. Cui & Y.F. Sun, Sa. melanocarpum B.K. Cui & Y.F. Sun, Sa. microsporum B.K. Cui & Y.F. Sun and Sa. tricolor B.K. Cui & Y.F. Sun; New combinations: Furtadoella biseptata (Costa-Rezende et al.) B.K. Cui & Y.F. Sun, Fu. brasiliensis (Singer) B.K. Cui & Y.F. Sun, Fu. corneri (Gulaid & Ryvarden) B.K. Cui & Y.F. Sun, Neoganoderma neurosporum (J.S. Furtado) B.K. Cui & Y.F. Sun, Sinoganoderma shandongense (J.D. Zhao & L.W. Xu) B.K. Cui, J.H. Xing & Y.F. Sun and Trachydermella tsunodae (Yasuda ex Lloyd) B.K. Cui & Y.F. Sun. Citation: Sun Y-F, Xing J-H, He X-L, Wu D-M, Song C-G, Liu S, Vlasák J, Gates G, Gibertoni TB, Cui B-K (2022). Species diversity, systematic revision and molecular phylogeny of Ganodermataceae (Polyporales, Basidiomycota) with an emphasis on Chinese collections. Studies in Mycology 101: 287-415. doi: 10.3114/sim.2022.101.05.

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灵芝科(多孢子门,担子菌门)的物种多样性、系统修订和分子系统发育——以中国标本为重点。
灵芝科是大型真菌的主要科之一,因为该科的物种具有重要的生态和经济意义。双壁担子孢子,孢子内壁有纹饰,是灵芝科植物的特征。这是一个庞大而复杂的家庭;虽然对灵芝科的研究较多,但对其全球多样性、地理分布、分类及分子系统发育的认识仍不完全。本文通过形态学分析和分子系统发育分析,对世界范围内的灵皮科植物进行了分类和系统发育研究,包括内部转录间隔区(ITS)、核糖体RNA基因大亚基(nLSU)、RNA聚合酶II基因第二大亚基(rpb2)、翻译伸长因子1-α基因(tef1)、线粒体rRNA小亚基基因(mtSSU)和核糖体RNA小亚基基因(nSSU)。系统发育分析共获得1382条序列,其中新生成序列817条,包括ITS序列132条、nLSU序列139条、rpb2序列83条、tef1序列124条、mtSSU序列150条、nSSU序列189条。合并的6个基因数据集包括来自灵芝科146个分类群的391个标本的序列。通过形态学和系统发育分析,确定了灵芝科14属:Amauroderma、Amaurodermellus、Cristataspora、Foraminispora、Furtadoella、Ganoderma、Haddowia、Humphreya、Magoderna、Neoganoderma、Sanguinoderma、Sinoganoderma、Tomophagus和Trachydermella。其中,神经孢子灵芝被命名为新灵芝(Neoganoderma gen. 11);建议将山东灵芝命名为Sinoganoderma gen.;由于Furtadoa是天南星科一个植物属的同音异义,因此建议将以前属于Furtadoa的分类群包括在内;由于厚皮菌是板蓝科中一个地衣属的同音名,故建议将厚皮菌包括在癣菌科中。新种23种:松香灵芝、附子灵芝、高山灵芝、野野灵芝、castaneum、chuxiongense、cocoicola、fallax、广仙灵芝、葛根灵芝、亚光灵芝、亚光灵芝、亚光灵芝、亚光灵芝、亚光灵芝、亚光灵芝、铜山灵芝、云岭灵芝、大气孔灵芝、广东血皮灵芝、广东血皮灵芝。infundibulare Sa。longistipitum Sa。melanocarpum Sa。小孢子菌和Sa。三色旗被描述。此外,本文还详细介绍了另外33种已知物种,以供比较。本文报道了灵芝科10属担子孢子的扫描电镜。同时提供了灵芝科公认属和灵芝、灵芝属、灵芝属、灵芝属、血皮属、灵芝属等公认种的密钥。共有灵芝科植物278种,其中分布于中国的有59种。新属:Furtadoella B.K. Cui & yf Sun, Neoganoderma B.K. Cui & yf Sun, Sinoganoderma B.K. Cui, J.H. Xing & yf Sun和trachyderella B.K. Cui & yf Sun;新物种:灵芝acaciicola B.K.崔,J.H.邢& Y.F.太阳,g . acontextum B.K.崔,J.H.邢& Vlasak g . alpinum B.K.崔,J.H.邢& Y.F.太阳,g . bubalinomarginatum B.K.崔,J.H.邢& Y.F.太阳,g . castaneum B.K.崔,J.H.邢& Y.F.太阳,g . chuxiongense B.K.崔,J.H.邢& Y.F.太阳,g . cocoicola B.K.崔,J.H.邢& Y.F.太阳,g . fallax B.K.崔,J.H.邢& Vlasak g . guangxiense B.K.崔,J.H.邢& Y.F.太阳,g . puerense B.K.崔,J.H.邢& Y.F.太阳,g . subangustisporum B.K.崔,邢建宏,孙云峰,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江,黄浦江。崔伯奎,孙永峰,萨。longistitium崔伯奎,孙云峰,萨。崔宝凯,孙永峰,孙莎。小孢子菌崔B.K. &孙云峰,萨。三色崔炳坤、孙永飞;新组合:Furtadoella biseptata (Costa-Rezende et .)brasiliensis (Singer)崔宝坤,孙永峰,傅莹。牛角菌(Gulaid & Ryvarden)崔b.k. &孙云峰,神经孢子新灵芝(J.S. Furtado)崔b.k. &孙云峰,山东灵芝(赵j.d. &徐丽伟)崔b.k.,邢家辉&孙云峰,tsunodae厚皮(Yasuda ex Lloyd)崔b.k. &孙云峰。引用本文:孙云峰,邢建华,何小林,吴德明,宋春光,刘松,Vlasák J, Gates G, Gibertoni TB,崔伯康(2022)。灵芝科(多孢子门,担子菌门)的物种多样性、系统修订和分子系统发育——以中国标本为重点。真菌学研究101:287-415。doi: 10.3114 / sim.2022.101.05。
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来源期刊
Studies in Mycology
Studies in Mycology 生物-真菌学
CiteScore
35.60
自引率
3.00%
发文量
7
期刊介绍: The international journal Studies in Mycology focuses on advancing the understanding of filamentous fungi, yeasts, and various aspects of mycology. It publishes comprehensive systematic monographs as well as topical issues covering a wide range of subjects including biotechnology, ecology, molecular biology, pathology, and systematics. This Open-Access journal offers unrestricted access to its content. Each issue of Studies in Mycology consists of around 5 to 6 papers, either in the form of monographs or special focused topics. Unlike traditional length restrictions, the journal encourages submissions of manuscripts with a minimum of 50 A4 pages in print. This ensures a thorough exploration and presentation of the research findings, maximizing the depth of the published work.
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