Adversarial Bayesian Optimization for Quantifying Motion Artifact Within MRI.

Anastasia Butskova, Rain Juhl, Dženan Zukić, Aashish Chaudhary, Kilian M Pohl, Qingyu Zhao
{"title":"Adversarial Bayesian Optimization for Quantifying Motion Artifact Within MRI.","authors":"Anastasia Butskova,&nbsp;Rain Juhl,&nbsp;Dženan Zukić,&nbsp;Aashish Chaudhary,&nbsp;Kilian M Pohl,&nbsp;Qingyu Zhao","doi":"10.1007/978-3-030-87602-9_8","DOIUrl":null,"url":null,"abstract":"<p><p>Subject motion during an MRI sequence can cause ghosting effects or diffuse image noise in the phase-encoding direction and hence is likely to bias findings in neuroimaging studies. Detecting motion artifacts often relies on experts visually inspecting MRIs, which is subjective and expensive. To improve this detection, we develop a framework to automatically quantify the severity of motion artifact within a brain MRI. We formulate this task as a regression problem and train the regressor from a data set of MRIs with various amounts of motion artifacts. To resolve the issue of missing fine-grained ground-truth labels (level of artifacts), we propose Adversarial Bayesian Optimization (ABO) to infer the distribution of motion parameters (i.e., rotation and translation) underlying the acquired MRI data and then inject synthetic motion artifacts sampled from that estimated distribution into motion-free MRIs. After training the regressor on the synthetic data, we applied the model to quantify the motion level in 990 MRIs collected by the National Consortium on Alcohol and Neurodevelopment in Adolescence. Results show that the motion level derived by our approach is more reliable than the traditional metric based on Entropy Focus Criterion and manually defined binary labels.</p>","PeriodicalId":92572,"journal":{"name":"PRedictive Intelligence in MEdicine. PRIME (Workshop)","volume":"12928 ","pages":"83-92"},"PeriodicalIF":0.0000,"publicationDate":"2021-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9212065/pdf/nihms-1816521.pdf","citationCount":"2","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"PRedictive Intelligence in MEdicine. PRIME (Workshop)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1007/978-3-030-87602-9_8","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2021/9/25 0:00:00","PubModel":"Epub","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 2

Abstract

Subject motion during an MRI sequence can cause ghosting effects or diffuse image noise in the phase-encoding direction and hence is likely to bias findings in neuroimaging studies. Detecting motion artifacts often relies on experts visually inspecting MRIs, which is subjective and expensive. To improve this detection, we develop a framework to automatically quantify the severity of motion artifact within a brain MRI. We formulate this task as a regression problem and train the regressor from a data set of MRIs with various amounts of motion artifacts. To resolve the issue of missing fine-grained ground-truth labels (level of artifacts), we propose Adversarial Bayesian Optimization (ABO) to infer the distribution of motion parameters (i.e., rotation and translation) underlying the acquired MRI data and then inject synthetic motion artifacts sampled from that estimated distribution into motion-free MRIs. After training the regressor on the synthetic data, we applied the model to quantify the motion level in 990 MRIs collected by the National Consortium on Alcohol and Neurodevelopment in Adolescence. Results show that the motion level derived by our approach is more reliable than the traditional metric based on Entropy Focus Criterion and manually defined binary labels.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
MRI运动伪影量化的对抗贝叶斯优化。
在MRI序列中,受试者的运动可能会在相位编码方向上引起重影效应或弥漫性图像噪声,因此可能会使神经影像学研究的结果产生偏差。检测运动伪影通常依赖于专家视觉检查核磁共振成像,这是主观的和昂贵的。为了改进这种检测,我们开发了一个框架来自动量化大脑MRI中运动伪影的严重程度。我们将此任务表述为一个回归问题,并从具有不同数量运动伪影的mri数据集训练回归器。为了解决缺少细粒度的真值标签(伪影水平)的问题,我们提出了对抗贝叶斯优化(ABO)来推断获得的MRI数据下的运动参数(即旋转和平移)的分布,然后将从估计分布中采样的合成运动伪影注入到无运动的MRI中。在对合成数据进行回归训练后,我们应用该模型量化了国家酒精与青少年神经发育协会收集的990张核磁共振成像的运动水平。结果表明,与基于熵焦点准则和手工定义二值标签的传统度量相比,该方法得到的运动水平更可靠。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
自引率
0.00%
发文量
0
期刊最新文献
Spectral Graph Sample Weighting for Interpretable Sub-cohort Analysis in Predictive Models for Neuroimaging. SynthA1c: Towards Clinically Interpretable Patient Representations for Diabetes Risk Stratification. Imputing Brain Measurements Across Data Sets via Graph Neural Networks. Multiple Instance Neuroimage Transformer. Bridging the Gap between Deep Learning and Hypothesis-Driven Analysis via Permutation Testing.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1