A cell image segmentation method based on edge feature residual fusion

IF 4.2 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Methods Pub Date : 2023-11-01 DOI:10.1016/j.ymeth.2023.09.009
Jinlian Du, Yanqiu Zhang, Xueyun Jin, Xiao Zhang
{"title":"A cell image segmentation method based on edge feature residual fusion","authors":"Jinlian Du,&nbsp;Yanqiu Zhang,&nbsp;Xueyun Jin,&nbsp;Xiao Zhang","doi":"10.1016/j.ymeth.2023.09.009","DOIUrl":null,"url":null,"abstract":"<div><p>In recent years, cancer has seriously damaged human health, and the morphological structure of cells serves as an important basis for cancer diagnosis and grading. Automatic cell segmentation based on deep learning has become an important means of computer-aided pathological diagnosis. Aiming at the existing problems of rough segmentation boundaries and inaccurate segmentation in cell image segmentation, this paper designs a cell image segmentation network model (ERF-TransUNet) based on edge feature residual fusion from the perspective of mutual complementarity and constraint between edge features and object features. The model uses a hybrid architecture of CNN and Transformer to extract multi-scale features from cell images, and adds independent edge feature extraction modules and residual fusion modules to enhance the extraction of edge features and their constraints when fusing with cell object features, improving the accuracy of cell contour positioning. Through experiments on two gland cell datasets, CRAG and Glas, and comparing the segmentation effects with current popular deep learning models, the network model proposed in this paper has achieved good performance in both Dice coefficient and Hausdorff distance, which can effectively improve the segmentation effect of cell images.</p></div>","PeriodicalId":390,"journal":{"name":"Methods","volume":"219 ","pages":"Pages 111-118"},"PeriodicalIF":4.2000,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1046202323001639/pdfft?md5=ecf65e09185af626a206f62bc046fc3c&pid=1-s2.0-S1046202323001639-main.pdf","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Methods","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1046202323001639","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0

Abstract

In recent years, cancer has seriously damaged human health, and the morphological structure of cells serves as an important basis for cancer diagnosis and grading. Automatic cell segmentation based on deep learning has become an important means of computer-aided pathological diagnosis. Aiming at the existing problems of rough segmentation boundaries and inaccurate segmentation in cell image segmentation, this paper designs a cell image segmentation network model (ERF-TransUNet) based on edge feature residual fusion from the perspective of mutual complementarity and constraint between edge features and object features. The model uses a hybrid architecture of CNN and Transformer to extract multi-scale features from cell images, and adds independent edge feature extraction modules and residual fusion modules to enhance the extraction of edge features and their constraints when fusing with cell object features, improving the accuracy of cell contour positioning. Through experiments on two gland cell datasets, CRAG and Glas, and comparing the segmentation effects with current popular deep learning models, the network model proposed in this paper has achieved good performance in both Dice coefficient and Hausdorff distance, which can effectively improve the segmentation effect of cell images.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
一种基于边缘特征残差融合的细胞图像分割方法。
近年来,癌症严重损害了人体健康,细胞形态结构是癌症诊断和分级的重要依据。基于深度学习的细胞自动分割已成为计算机辅助病理诊断的重要手段。针对细胞图像分割中存在的分割边界粗糙、分割不准确等问题,从边缘特征与目标特征互补约束的角度,设计了一种基于边缘特征残差融合的细胞图像分割网络模型(ERF-TransUNet)。该模型使用CNN和Transformer的混合架构从细胞图像中提取多尺度特征,并添加了独立的边缘特征提取模块和残差融合模块,在与细胞对象特征融合时增强了边缘特征及其约束的提取,提高了细胞轮廓定位的准确性。通过在CRAG和Glas两个腺细胞数据集上的实验,并将分割效果与当前流行的深度学习模型进行比较,本文提出的网络模型在Dice系数和Hausdorff距离方面都取得了良好的性能,可以有效地提高细胞图像的分割效果。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Methods
Methods 生物-生化研究方法
CiteScore
9.80
自引率
2.10%
发文量
222
审稿时长
11.3 weeks
期刊介绍: Methods focuses on rapidly developing techniques in the experimental biological and medical sciences. Each topical issue, organized by a guest editor who is an expert in the area covered, consists solely of invited quality articles by specialist authors, many of them reviews. Issues are devoted to specific technical approaches with emphasis on clear detailed descriptions of protocols that allow them to be reproduced easily. The background information provided enables researchers to understand the principles underlying the methods; other helpful sections include comparisons of alternative methods giving the advantages and disadvantages of particular methods, guidance on avoiding potential pitfalls, and suggestions for troubleshooting.
期刊最新文献
Robust feature learning using contractive autoencoders for multi-omics clustering in cancer subtyping. Optimizing retinal Imaging: Evaluation of ultrasmall TiO2 Nanoparticle- fluorescein conjugates for improved Fundus fluorescein angiography. Ab-Amy 2.0: Predicting light chain amyloidogenic risk of therapeutic antibodies based on antibody language model. Data preprocessing methods for selective sweep detection using convolutional neural networks. SITP: A single cell bioinformatics analysis flow captures proteasome markers in the development of breast cancer
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1