A comprehensive study on SARS-CoV-2 Through Gene Expression Meta-Analysis and Network Biology Approach

Q3 Biochemistry, Genetics and Molecular Biology Journal of Applied Biotechnology Reports Pub Date : 2021-09-26 DOI:10.30491/jabr.2021.275694.1360
Utkarsh Raj, S. Rai, S. Mathur, A. Saxena, A. Kaushik
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Abstract

Introduction: Coronaviruses are significant pathogens of both human and animals and are globally distributed. Out of seven CoVs strains, the most lethal coronavirus strains being portrayed is SARS-CoV-2. It can cause bronchial asthma, and severe pneumonia and acute respiratory disease. Due to its contagion in infants, adults, and immunocompromised patients which further results in making this a deadly disease, thus there is an urgent need to develop effective and safe therapeutics against it.Materials and Methods: Meta-analysis of publicly available gene expression datasets belonging to SARS-CoV-2, SARS-CoV, MERS-CoV, and HCoV-229E were carried out to identify the potential differentially expressed genes exclusively associated with SARS-CoV-2, and then a network model was developed to decipher significant drug targets, associated pathways and drug candidates which can be repurposed for this infection.Results: The COVID-19 infection mainly targets immune responses and regulatory processes. A novel role of Relaxin signaling pathway was identified in SARS-CoV-2 infection. Anti-inflammatory, anti-tumor, nutraceutical and anthelmintic agents were found to be good prospective candidates for repurposing against COVID-19.Conclusions: This theoretical study resulted in the identification of approved drug targets that may have the potential to be repurposed for COVID 19 treatment.
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基因表达Meta分析和网络生物学方法对严重急性呼吸系统综合征冠状病毒2型的综合研究
导语:冠状病毒是人类和动物的重要病原体,分布在全球。在七种冠状病毒毒株中,最致命的冠状病毒毒株是SARS-CoV-2。它可以引起支气管哮喘,严重的肺炎和急性呼吸道疾病。由于其在婴儿、成人和免疫功能低下患者中的传染性进一步导致其成为一种致命疾病,因此迫切需要开发有效和安全的治疗方法。材料和方法:对SARS-CoV-2、SARS-CoV、MERS-CoV和HCoV-229E的公开基因表达数据集进行meta分析,确定与SARS-CoV-2特异性相关的潜在差异表达基因,并建立网络模型,以解读可用于该感染的重要药物靶点、相关途径和候选药物。结果:COVID-19感染主要针对免疫应答和调节过程。松弛素信号通路在SARS-CoV-2感染中的新作用被发现。抗炎、抗肿瘤、营养保健和驱虫药被发现是重新用于对抗COVID-19的良好候选药物。结论:该理论研究确定了已批准的药物靶点,这些靶点可能有可能被重新用于治疗COVID - 19。
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来源期刊
Journal of Applied Biotechnology Reports
Journal of Applied Biotechnology Reports Biochemistry, Genetics and Molecular Biology-Biotechnology
CiteScore
1.90
自引率
0.00%
发文量
0
期刊介绍: The Journal of Applied Biotechnology Reports (JABR) publishes papers describing experimental work relating to all fundamental issues of biotechnology including: Cell Biology, Genetics, Microbiology, Immunology, Molecular Biology, Biochemistry, Embryology, Immunogenetics, Cell and Tissue Culture, Molecular Ecology, Genetic Engineering and Biological Engineering, Bioremediation and Biodegradation, Bioinformatics, Biotechnology Regulations, Pharmacogenomics, Gene Therapy, Plant, Animal, Microbial and Environmental Biotechnology, Nanobiotechnology, Medical Biotechnology, Biosafety, Biosecurity, Bioenergy, Biomass, Biomaterials and Biobased Chemicals and Enzymes. Journal of Applied Biotechnology Reports promotes a special emphasis on: -Improvement methods in biotechnology -Optimization process for high production in fermentor systems -Protein and enzyme engineering -Antibody engineering and monoclonal antibody -Molecular farming -Bioremediation -Immobilizing methods -biocatalysis
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