The mitogenome of the brown pod-sucking bug Clavigralla tomentosicollis Stäl (Hemiptera: Coreidae)

Q1 Agricultural and Biological Sciences Agri Gene Pub Date : 2017-09-01 DOI:10.1016/j.aggene.2017.07.002
Laura D. Steele , Weilin Sun , M. Carmen Valero , James Adebayo Ojo , Keon Mook Seong , Brad S. Coates , Venu M. Margam , Manuele Tamò , Barry R. Pittendrigh
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引用次数: 3

Abstract

The brown pod-sucking bug, Clavigralla tomentosicollis Stäl (Hemiptera: Coreidae), causes significant damage to cultivated cowpea, Vigna unguiculata Walp, a staple crop in sub-Saharan Africa. C. tomentosicollis pierce and suck sap from cowpea pods, resulting in reduced grain yield and quality. The complete, 16,089 bp mitogenome of C. tomentosicollis encodes 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs) and an A + T rich control region, with gene order and orientation identical to that of the insect ancestral gene order. The initiation and termination codons for the PCGs used standard ATN codons and TAA or TAG codons respectively. All predicted tRNAs fold into a clover-leaf secondary structures with the exception of tRNA-Ser (AGN) with a semi-loop dihydrouridine arm. The 1509 bps A + T rich region contains a single 89 bp tandem repeat unit duplicated 3.7 times. When compared with other published Coreoidea mitogenomes, C. tomentosicollis was also highly A  T skewed, and similar in both size and A  T%; however, its longer tandem repeat within the A + T rich region was unique. The C. tomentosicollis mitogenome can serve as a foundation to combine molecular marker data with pest monitoring strategies to better understand the population dynamics of this species.

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棕色吸荚虫Clavigralla comtosicolis Stäl的有丝分裂基因组(半翅目:Coreidae)
褐色的吸豆虫,Clavigralla tomentosicollis Stäl(半翅目:Coreidae科),对种植的豇豆(Vigna unguiculata Walp)造成严重损害,豇豆是撒哈拉以南非洲的主要作物。毛囊线虫从豇豆豆荚中刺穿并吸取汁液,导致籽粒产量和品质下降。全长16089 bp的毛卷虫有丝分裂基因组编码13个蛋白编码基因(PCGs)、22个转移rna (tRNAs)、2个核糖体rna (RNAs)和1个富含A + T的控制区,基因序列和取向与昆虫祖先基因序列相同。PCGs的起始密码子和终止密码子分别使用标准的ATN密码子和TAA或TAG密码子。除了tRNA-Ser (AGN)具有半环二氢吡啶臂外,所有预测的trna都折叠成三叶草二级结构。1509 bps的A + T富区包含一个89 bp的串联重复单元,重复3.7次。与其他已发表的核总目有丝分裂基因组相比,毛囊绦虫也具有高度的A - T偏态,并且在大小和A - T%上相似;然而,其在富含A + T区域内较长的串联重复序列是独特的。绒毛囊绦虫有丝分裂基因组可以作为分子标记数据与害虫监测策略相结合的基础,以更好地了解该物种的种群动态。
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Agri Gene
Agri Gene Agricultural and Biological Sciences-Agricultural and Biological Sciences (miscellaneous)
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期刊介绍: Agri Gene publishes papers that focus on the regulation, expression, function and evolution of genes in crop plants, farm animals, and agriculturally important insects and microorganisms. Agri Gene strives to be a diverse journal and topics in multiple fields will be considered for publication so long as their main focus is on agriculturally important organisms (plants, animals, insects, or microorganisms). Although not limited to the following, some examples of potential topics include: Gene discovery and characterization. Genetic markers to guide traditional breeding. Genetic effects of transposable elements. Evolutionary genetics, molecular evolution, population genetics, and phylogenetics. Profiling of gene expression and genetic variation. Biotechnology and crop or livestock improvement. Genetic improvement of biological control microorganisms. Genetic control of secondary metabolic pathways and metabolic enzymes of crop pathogens. Transcription analysis of beneficial or pest insect developmental stages Agri Gene encourages submission of novel manuscripts that present a reasonable level of analysis, functional relevance and/or mechanistic insight. Agri Gene also welcomes papers that have predominantly a descriptive component but improve the essential basis of knowledge for subsequent functional studies, or which provide important confirmation of recently published discoveries provided that the information is new.
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