Twenty-five well-justified fossil calibrations for primate divergences

IF 2 4区 地球科学 Q1 Earth and Planetary Sciences Palaeontologia Electronica Pub Date : 2023-01-01 DOI:10.26879/1249
D. de Vries, R. Beck
{"title":"Twenty-five well-justified fossil calibrations for primate divergences","authors":"D. de Vries, R. Beck","doi":"10.26879/1249","DOIUrl":null,"url":null,"abstract":"Phylogenies with estimates of divergence times are essential for investigating many evolutionary questions. In principle, “tip-dating” is arguably the most appropriate approach, with fossil and extant taxa analysed together in a single analysis, and topology and divergence times estimated simultaneously. However, “node-dating” (as used in many molecular clock analyses), in which fossil evidence is used to calibrate the age of particular nodes a priori, will probably remain the dominant approach, due to various issues with analysing morphological and molecular data together. Here, we provide a list of 25 well-justified node calibrations for primate divergences, following best practices: 16 within Haplorhini, four within Strepsirrhini, one for crown Primates, and four for older divergences within Euarchontoglires. In each case, we provide a hard minimum bound, and for 22 of these we also provide a soft maximum bound and a suggested prior distribution. For each calibrated node, we provide the age of the oldest fossil of each daughter lineage that descends from it, which allows use of the “CladeAge” method for specifying priors on node ages. Dorien de Vries. Ecosystems and Environment Research Centre, School of Science, Engineering and Environment, University of Salford, Manchester, UK. (Corresponding author) d.devries@salford.ac.uk @PaleoDorien Robin M.D. Beck. Ecosystems and Environment Research Centre, School of Science, Engineering and Environment, University of Salford, Manchester, UK. r.m.d.beck@salford.ac.uk @robinmdbeck","PeriodicalId":56100,"journal":{"name":"Palaeontologia Electronica","volume":null,"pages":null},"PeriodicalIF":2.0000,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"4","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Palaeontologia Electronica","FirstCategoryId":"89","ListUrlMain":"https://doi.org/10.26879/1249","RegionNum":4,"RegionCategory":"地球科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Earth and Planetary Sciences","Score":null,"Total":0}
引用次数: 4

Abstract

Phylogenies with estimates of divergence times are essential for investigating many evolutionary questions. In principle, “tip-dating” is arguably the most appropriate approach, with fossil and extant taxa analysed together in a single analysis, and topology and divergence times estimated simultaneously. However, “node-dating” (as used in many molecular clock analyses), in which fossil evidence is used to calibrate the age of particular nodes a priori, will probably remain the dominant approach, due to various issues with analysing morphological and molecular data together. Here, we provide a list of 25 well-justified node calibrations for primate divergences, following best practices: 16 within Haplorhini, four within Strepsirrhini, one for crown Primates, and four for older divergences within Euarchontoglires. In each case, we provide a hard minimum bound, and for 22 of these we also provide a soft maximum bound and a suggested prior distribution. For each calibrated node, we provide the age of the oldest fossil of each daughter lineage that descends from it, which allows use of the “CladeAge” method for specifying priors on node ages. Dorien de Vries. Ecosystems and Environment Research Centre, School of Science, Engineering and Environment, University of Salford, Manchester, UK. (Corresponding author) d.devries@salford.ac.uk @PaleoDorien Robin M.D. Beck. Ecosystems and Environment Research Centre, School of Science, Engineering and Environment, University of Salford, Manchester, UK. r.m.d.beck@salford.ac.uk @robinmdbeck
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
灵长类动物差异的25个合理的化石校准
系统发育与分化时间的估计对于研究许多进化问题是必不可少的。原则上,“尖端测年”可以说是最合适的方法,化石和现存的分类群在一次分析中一起分析,同时估计拓扑结构和分化时间。然而,“节点测年”(在许多分子钟分析中使用),其中使用化石证据来先验地校准特定节点的年龄,可能仍然是主要的方法,因为同时分析形态学和分子数据存在各种问题。在这里,我们提供了灵长类分化的25个合理的节点校准列表,遵循最佳实践:Haplorhini中有16个,Strepsirrhini中有4个,crown灵长类中有1个,euarchontoglies中有4个更老的分化。在每种情况下,我们都提供了一个硬最小界,对于其中的22种情况,我们还提供了一个软最大界和一个建议的先验分布。对于每个校准的节点,我们提供了每个子谱系中最古老的化石的年龄,这允许使用“枝龄”方法来指定节点年龄的先验。多里安·德·弗里斯。英国曼彻斯特索尔福德大学科学、工程与环境学院生态系统与环境研究中心。(通讯作者)d.devries@salford.ac.uk @PaleoDorien Robin M.D. Beck。英国曼彻斯特索尔福德大学科学、工程与环境学院生态系统与环境研究中心。r.m.d.beck@salford.ac.uk @robinmdbeck
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Palaeontologia Electronica
Palaeontologia Electronica 地学-古生物学
CiteScore
3.60
自引率
0.00%
发文量
20
审稿时长
>12 weeks
期刊介绍: Founded in 1997, Palaeontologia Electronica (PE) is the longest running open-access, peer-reviewed electronic journal and covers all aspects of palaeontology. PE uses an external double-blind peer review system for all manuscripts. Copyright of scientific papers is held by one of the three sponsoring professional societies at the author''s choice. Reviews, commentaries, and other material is placed in the public domain. PE papers comply with regulations for taxonomic nomenclature established in the International Code of Zoological Nomenclature and the International Code of Nomenclature for Algae, Fungi, and Plants.
期刊最新文献
White shark comparison reveals a slender body for the extinct megatooth shark, Otodus megalodon (Lamniformes: Otodontidae). Middle Eocene cartilaginous fishes (Vertebrata: Chondrichthyes) of the Dnieper-Donets Basin, northern Ukraine. Morphological insights into the lobster genus Uncina Quenstedt, 1851 based on new material from the Ya Ha Tinda Konservat-Lagerstätte, Canada (Early Jurassic) Redescription of soft tissue preservation in the holotype of Scaphognathus crassirostris (Goldfuß, 1831) using reflectance transformation imaging New primates from the Eocene of Saskatchewan, Canada: Revision of the primates from the Cypress Hills Formation with description of new taxa
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1