Pattern formation on a growing oblate spheroid. an application to adult sea urchin development

IF 1 Q3 Engineering Journal of Computational Dynamics Pub Date : 2021-01-01 DOI:10.3934/jcd.2021027
D. Lacitignola, Massimo Frittelli, V. Cusimano, A. De Gaetano
{"title":"Pattern formation on a growing oblate spheroid. an application to adult sea urchin development","authors":"D. Lacitignola, Massimo Frittelli, V. Cusimano, A. De Gaetano","doi":"10.3934/jcd.2021027","DOIUrl":null,"url":null,"abstract":"In this study, the formation of the adult sea urchin shape is rationalized within the Turing's theory paradigm. The emergence of protrusions from the expanding underlying surface is described through a reaction-diffusion model with Gray-Scott kinetics on a growing oblate spheroid. The case of slow exponential isotropic growth is considered. The model is first studied in terms of the spatially homogenous equilibria and of the bifurcations involved. Turing diffusion-driven instability is shown to occur and the impact of the slow exponential growth on the resulting Turing regions adequately discussed. Numerical investigations validate the theoretical results showing that the combination between an inhibitor and an activator can result in a distribution of spot concentrations that underlies the development of ambulacral tentacles in the sea urchin's adult stage. Our findings pave the way for a model-driven experimentation that could improve the current biological understanding of the gene control networks involved in patterning.","PeriodicalId":37526,"journal":{"name":"Journal of Computational Dynamics","volume":"87 1","pages":""},"PeriodicalIF":1.0000,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Computational Dynamics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.3934/jcd.2021027","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Engineering","Score":null,"Total":0}
引用次数: 2

Abstract

In this study, the formation of the adult sea urchin shape is rationalized within the Turing's theory paradigm. The emergence of protrusions from the expanding underlying surface is described through a reaction-diffusion model with Gray-Scott kinetics on a growing oblate spheroid. The case of slow exponential isotropic growth is considered. The model is first studied in terms of the spatially homogenous equilibria and of the bifurcations involved. Turing diffusion-driven instability is shown to occur and the impact of the slow exponential growth on the resulting Turing regions adequately discussed. Numerical investigations validate the theoretical results showing that the combination between an inhibitor and an activator can result in a distribution of spot concentrations that underlies the development of ambulacral tentacles in the sea urchin's adult stage. Our findings pave the way for a model-driven experimentation that could improve the current biological understanding of the gene control networks involved in patterning.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
在生长的扁球体上形成图案。成体海胆发育的应用
在本研究中,成年海胆形状的形成在图灵理论范式中被合理化。从膨胀的下垫面突起物的出现是通过在生长的扁圆球体上具有Gray-Scott动力学的反应扩散模型来描述的。考虑了慢指数各向同性增长的情况。该模型首先从空间齐次平衡和所涉及的分岔的角度进行了研究。图灵扩散驱动的不稳定性是会发生的,并充分讨论了慢指数增长对图灵区域的影响。数值研究验证了理论结果,表明抑制剂和活化剂的结合可以导致斑点浓度的分布,这是海胆成虫阶段游动触须发育的基础。我们的发现为模型驱动的实验铺平了道路,可以提高目前对模式中涉及的基因控制网络的生物学理解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Journal of Computational Dynamics
Journal of Computational Dynamics Engineering-Computational Mechanics
CiteScore
2.30
自引率
10.00%
发文量
31
期刊介绍: JCD is focused on the intersection of computation with deterministic and stochastic dynamics. The mission of the journal is to publish papers that explore new computational methods for analyzing dynamic problems or use novel dynamical methods to improve computation. The subject matter of JCD includes both fundamental mathematical contributions and applications to problems from science and engineering. A non-exhaustive list of topics includes * Computation of phase-space structures and bifurcations * Multi-time-scale methods * Structure-preserving integration * Nonlinear and stochastic model reduction * Set-valued numerical techniques * Network and distributed dynamics JCD includes both original research and survey papers that give a detailed and illuminating treatment of an important area of current interest. The editorial board of JCD consists of world-leading researchers from mathematics, engineering, and science, all of whom are experts in both computational methods and the theory of dynamical systems.
期刊最新文献
Approximated exponential integrators for the stochastic Manakov equation Dynamical optimal transport of nonlinear control-affine systems Subgradient algorithm for computing contraction metrics for equilibria Convergence of the vertical gradient flow for the Gaussian Monge problem Friction-adaptive descent: A family of dynamics-based optimization methods
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1