Ester Production Using the Lipid Composition of Coffee Ground Oil (Coffea arabica): A Theoretical Study of Eversa® Transform 2.0 Lipase as an Enzymatic Biocatalyst

Compounds Pub Date : 2023-07-28 DOI:10.3390/compounds3030031
Millena M.R. Nobre, Ananias Freire da Silva, Amanda Maria Menezes, Francisco Lennon Barbosa da Silva, Iesa Matos Lima, R. P. Colares, M. C. M. Souza, E. S. Marinho, R. Melo, J. C. D. Santos, Aluísio Marques da Fonseca
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Abstract

The scientific community recognizes coffee grounds (Coffea arabica) as an important biological residue, which led to using the Eversa® Transform 2.0 lipase as an in silico enzymatic catalyst for coffee grounds’ free fatty acids (FFA). Molecular modeling studies, including molecular docking, were performed, which revealed the structures of the lipase and showed the primary interactions between the ligands and the amino acid residues in the active site of the enzyme. Of the ligands tested, 6,9-methyl octadienoate had the best free energy of −6.1 kcal/mol, while methyl octadecenoate and methyl eicosanoate had energies of −5.7 kcal/mol. Molecular dynamics confirmed the stability of the bonds with low Root Mean Square Deviation (RMSD) values. The MMGBSA study showed that methyl octadecenoate had the best free energy estimate, and CASTp identified key active sites for potential enzyme immobilization in experimental studies. Overall, this study provides efficient and promising results for future experimental investigations, showing a classification of oils present in coffee grounds and their binding affinity with Eversa.
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利用咖啡研磨油(阿拉比卡咖啡)的脂质组成生产酯:Eversa®转化2.0脂肪酶作为酶促生物催化剂的理论研究
科学界认识到咖啡渣(Coffea arabica)是一种重要的生物残留物,这导致使用Eversa®Transform 2.0脂肪酶作为咖啡渣游离脂肪酸(FFA)的硅酶催化剂。分子模型研究,包括分子对接,揭示了脂肪酶的结构,并显示了配体和酶活性位点氨基酸残基之间的主要相互作用。在所测试的配体中,6,9-八烯二酸甲酯的自由能最好,为−6.1 kcal/mol,而十八烯二酸甲酯和二十烷二酸甲酯的自由能为−5.7 kcal/mol。分子动力学证实了键的稳定性,其均方根偏差(RMSD)值较低。MMGBSA研究表明十八烯酸甲酯具有最好的自由能估计,CASTp在实验研究中确定了潜在酶固定的关键活性位点。总的来说,这项研究为未来的实验研究提供了有效和有希望的结果,显示了咖啡渣中存在的油的分类及其与Eversa的结合亲和力。
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