Integrating Fossil Observations Into Phylogenetics Using the Fossilized Birth–Death Model

A. Wright, David W. Bapst, Joëlle Barido‐Sottani, R. Warnock
{"title":"Integrating Fossil Observations Into Phylogenetics Using the Fossilized Birth–Death Model","authors":"A. Wright, David W. Bapst, Joëlle Barido‐Sottani, R. Warnock","doi":"10.1146/annurev-ecolsys-102220-030855","DOIUrl":null,"url":null,"abstract":"Over the past decade, a new set of methods for estimating dated trees has emerged. Originally referred to as the fossilized birth–death (FBD) process, this single model has expanded to a family of models that allows researchers to coestimate evolutionary parameters (e.g., diversification, sampling) and patterns alongside divergence times for a variety of applications from paleobiology to real-time epidemiology. We provide an overview of this family of models. We explore the ways in which these models correspond to methods in quantitative paleobiology, as the FBD process provides a framework through which neontological and paleontological approaches to phylogenetics and macroevolution can be unified. We also provide an overview of challenges associated with applying FBD models, particularly with an eye toward the fossil record. We conclude this piece by discussing several exciting avenues for the inclusion of fossil data in phylogenetic analyses. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 53 is November 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.","PeriodicalId":7988,"journal":{"name":"Annual Review of Ecology, Evolution, and Systematics","volume":"134 17 1","pages":""},"PeriodicalIF":11.2000,"publicationDate":"2022-08-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"13","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Annual Review of Ecology, Evolution, and Systematics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1146/annurev-ecolsys-102220-030855","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ECOLOGY","Score":null,"Total":0}
引用次数: 13

Abstract

Over the past decade, a new set of methods for estimating dated trees has emerged. Originally referred to as the fossilized birth–death (FBD) process, this single model has expanded to a family of models that allows researchers to coestimate evolutionary parameters (e.g., diversification, sampling) and patterns alongside divergence times for a variety of applications from paleobiology to real-time epidemiology. We provide an overview of this family of models. We explore the ways in which these models correspond to methods in quantitative paleobiology, as the FBD process provides a framework through which neontological and paleontological approaches to phylogenetics and macroevolution can be unified. We also provide an overview of challenges associated with applying FBD models, particularly with an eye toward the fossil record. We conclude this piece by discussing several exciting avenues for the inclusion of fossil data in phylogenetic analyses. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 53 is November 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
使用化石出生-死亡模型将化石观察整合到系统发育中
在过去的十年里,出现了一套新的估算树龄的方法。最初被称为化石出生-死亡(FBD)过程,这个单一模型已经扩展到一个模型家族,使研究人员能够共同估计进化参数(例如,多样化,采样)和模式以及从古生物学到实时流行病学的各种应用的分化时间。我们提供了这一系列模型的概述。我们探索了这些模型与定量古生物学方法相对应的方式,因为FBD过程提供了一个框架,通过该框架,新生学和古生物学方法可以统一系统发育和宏观进化。我们还概述了与应用FBD模型相关的挑战,特别是着眼于化石记录。我们通过讨论几种令人兴奋的将化石数据纳入系统发育分析的途径来结束这篇文章。《生态、进化和分类学年度评论》第53卷的最终在线出版日期预计为2022年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
CiteScore
19.90
自引率
1.70%
发文量
21
期刊介绍: The Annual Review of Ecology, Evolution, and Systematics is a scholarly publication that has been in circulation since 1970. It focuses on important advancements in the areas of ecology, evolutionary biology, and systematics, with relevance to all forms of life on Earth. The journal features essay reviews that encompass various topics such as phylogeny, speciation, molecular evolution, behavior, evolutionary physiology, population dynamics, ecosystem processes, and applications in invasion biology, conservation, and environmental management. Recently, the current volume of the journal transitioned from a subscription-based model to open access through the Annual Reviews' Subscribe to Open program. Consequently, all articles published in the current volume are now available under a CC BY license.
期刊最新文献
Niche Theory and Species Range Limits along Elevational Gradients: Perspectives and Future Directions Geographic Gradients in Species Interactions: From Latitudinal Patterns to Ecological Mechanisms The Evolution of Kin Discrimination Across the Tree of Life Animal Linguistics A Guided Tour of Phylogenetic Comparative Methods for Studying Trait Evolution
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1