Predicting the Mechanism of Tiannanxing-shengjiang Drug Pair in Treating Pain Using Network Pharmacology and Molecular Docking Technology.

IF 1.5 4区 医学 Q4 CHEMISTRY, MEDICINAL Current computer-aided drug design Pub Date : 2024-01-01 DOI:10.2174/1573409919666230525122447
Boning Wang, Yanlei Wang, Peng Mao, Yi Zhang, Yifan Li, Xing Liu, Bifa Fan
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Abstract

Objective: This study aimed to analyze the potential targets and mechanism of the Tiannanxing-shengjiang drug pair in pain treatment using network pharmacology and molecular docking technology.

Methods: The active components and target proteins of Tiannanxing-Shengjiang were obtained from the TCMSP database. The pain-related genes were acquired from the DisGeNET database. The common target genes between Tiannanxing-Shengjiang and pain were identified and subjected to the Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genome (KEGG) pathway enrichment analyses on the DAVID website. AutoDockTools and molecular dynamics simulation analysis were used to assess the binding of the components with the target proteins.

Results: Ten active components were screened out, such as stigmasterol, β-sitosterol, and dihydrocapsaicin. A total of 63 common targets between the drug and pain were identified. GO analysis showed the targets to be mainly associated with biological processes, such as inflammatory response and forward regulation of the EKR1 and EKR2 cascade. KEGG analysis revealed 53 enriched pathways, including pain-related calcium signaling, cholinergic synaptic signaling, and serotonergic pathway. Five compounds and 7 target proteins showed good binding affinities. These data suggest that Tiannanxing-shengjiang may alleviate pain through specific targets and signaling pathways.

Conclusion: The active ingredients in Tiannanxing-shengjiang might alleviate pain by regulating genes, such as CNR1, ESR1, MAPK3, CYP3A4, JUN, and HDAC1 through the signaling pathways, including intracellular calcium ion conduction, cholinergic prominent signaling, and cancer signaling pathway.

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利用网络药理学和分子对接技术预测天南星-生姜药对治疗疼痛的机理
研究目的本研究旨在利用网络药理学和分子对接技术分析天南星-生姜药对治疗疼痛的潜在靶点和机制:方法:天南星-生姜的有效成分和靶蛋白来自 TCMSP 数据库。疼痛相关基因来自 DisGeNET 数据库。确定天南星-生姜与疼痛之间的共同靶基因,并在 DAVID 网站上进行基因本体(GO)和京都基因与基因组百科全书(KEGG)通路富集分析。利用 AutoDockTools 和分子动力学模拟分析评估了这些成分与靶蛋白的结合情况:结果:筛选出了10种活性成分,如豆固醇、β-谷甾醇和二氢辣椒素。共鉴定出 63 个药物与疼痛之间的共同靶标。GO分析表明,这些靶点主要与生物过程有关,如炎症反应和EKR1和EKR2级联的前向调节。KEGG 分析显示了 53 个富集通路,包括与疼痛相关的钙信号转导、胆碱能突触信号转导和血清素能通路。5种化合物和7种靶蛋白显示出良好的结合亲和力。这些数据表明,天南星-生姜可通过特定靶点和信号通路缓解疼痛:结论:天南星生姜中的有效成分可通过细胞内钙离子传导、胆碱能信号传导、癌信号传导等信号通路,调节CNR1、ESR1、MAPK3、CYP3A4、JUN、HDAC1等基因,从而缓解疼痛。
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来源期刊
Current computer-aided drug design
Current computer-aided drug design 医学-计算机:跨学科应用
CiteScore
3.70
自引率
5.90%
发文量
46
审稿时长
>12 weeks
期刊介绍: Aims & Scope Current Computer-Aided Drug Design aims to publish all the latest developments in drug design based on computational techniques. The field of computer-aided drug design has had extensive impact in the area of drug design. Current Computer-Aided Drug Design is an essential journal for all medicinal chemists who wish to be kept informed and up-to-date with all the latest and important developments in computer-aided methodologies and their applications in drug discovery. Each issue contains a series of timely, in-depth reviews, original research articles and letter articles written by leaders in the field, covering a range of computational techniques for drug design, screening, ADME studies, theoretical chemistry; computational chemistry; computer and molecular graphics; molecular modeling; protein engineering; drug design; expert systems; general structure-property relationships; molecular dynamics; chemical database development and usage etc., providing excellent rationales for drug development.
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