Novel methods for elucidating modality importance in multimodal electrophysiology classifiers.

IF 2.5 4区 医学 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY Frontiers in Neuroinformatics Pub Date : 2023-03-15 eCollection Date: 2023-01-01 DOI:10.3389/fninf.2023.1123376
Charles A Ellis, Mohammad S E Sendi, Rongen Zhang, Darwin A Carbajal, May D Wang, Robyn L Miller, Vince D Calhoun
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Abstract

Introduction: Multimodal classification is increasingly common in electrophysiology studies. Many studies use deep learning classifiers with raw time-series data, which makes explainability difficult, and has resulted in relatively few studies applying explainability methods. This is concerning because explainability is vital to the development and implementation of clinical classifiers. As such, new multimodal explainability methods are needed.

Methods: In this study, we train a convolutional neural network for automated sleep stage classification with electroencephalogram (EEG), electrooculogram, and electromyogram data. We then present a global explainability approach that is uniquely adapted for electrophysiology analysis and compare it to an existing approach. We present the first two local multimodal explainability approaches. We look for subject-level differences in the local explanations that are obscured by global methods and look for relationships between the explanations and clinical and demographic variables in a novel analysis.

Results: We find a high level of agreement between methods. We find that EEG is globally the most important modality for most sleep stages and that subject-level differences in importance arise in local explanations that are not captured in global explanations. We further show that sex, followed by medication and age, had significant effects upon the patterns learned by the classifier.

Discussion: Our novel methods enhance explainability for the growing field of multimodal electrophysiology classification, provide avenues for the advancement of personalized medicine, yield unique insights into the effects of demographic and clinical variables upon classifiers, and help pave the way for the implementation of multimodal electrophysiology clinical classifiers.

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阐明多模态电生理学分类器中模态重要性的新方法。
介绍:多模态分类在电生理学研究中越来越常见。许多研究使用原始时间序列数据的深度学习分类器,这给可解释性带来了困难,导致应用可解释性方法的研究相对较少。这令人担忧,因为可解释性对于临床分类器的开发和实施至关重要。因此,我们需要新的多模态可解释性方法:在这项研究中,我们利用脑电图(EEG)、脑电图和肌电图数据训练了一个卷积神经网络,用于自动进行睡眠阶段分类。然后,我们提出了一种独特的、适用于电生理学分析的全局可解释性方法,并将其与现有方法进行了比较。我们介绍了前两种局部多模态可解释性方法。我们在局部解释中寻找被全局方法所掩盖的受试者层面的差异,并在一项新的分析中寻找解释与临床和人口统计学变量之间的关系:结果:我们发现不同方法之间的一致性很高。我们发现脑电图是大多数睡眠阶段最重要的总体模式,而受试者在局部解释中产生的重要性差异是总体解释所无法捕捉的。我们进一步发现,性别、药物治疗和年龄对分类器学习到的模式有显著影响:我们的新方法提高了不断发展的多模态电生理学分类领域的可解释性,为推进个性化医疗提供了途径,对人口统计学和临床变量对分类器的影响产生了独特的见解,并有助于为多模态电生理学临床分类器的实施铺平道路。
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来源期刊
Frontiers in Neuroinformatics
Frontiers in Neuroinformatics MATHEMATICAL & COMPUTATIONAL BIOLOGY-NEUROSCIENCES
CiteScore
4.80
自引率
5.70%
发文量
132
审稿时长
14 weeks
期刊介绍: Frontiers in Neuroinformatics publishes rigorously peer-reviewed research on the development and implementation of numerical/computational models and analytical tools used to share, integrate and analyze experimental data and advance theories of the nervous system functions. Specialty Chief Editors Jan G. Bjaalie at the University of Oslo and Sean L. Hill at the École Polytechnique Fédérale de Lausanne are supported by an outstanding Editorial Board of international experts. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics and the public worldwide. Neuroscience is being propelled into the information age as the volume of information explodes, demanding organization and synthesis. Novel synthesis approaches are opening up a new dimension for the exploration of the components of brain elements and systems and the vast number of variables that underlie their functions. Neural data is highly heterogeneous with complex inter-relations across multiple levels, driving the need for innovative organizing and synthesizing approaches from genes to cognition, and covering a range of species and disease states. Frontiers in Neuroinformatics therefore welcomes submissions on existing neuroscience databases, development of data and knowledge bases for all levels of neuroscience, applications and technologies that can facilitate data sharing (interoperability, formats, terminologies, and ontologies), and novel tools for data acquisition, analyses, visualization, and dissemination of nervous system data. Our journal welcomes submissions on new tools (software and hardware) that support brain modeling, and the merging of neuroscience databases with brain models used for simulation and visualization.
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