Bioinformatics analysis illustrates the functions of miR-377-5p in cervical cancer.

IF 6.5 3区 工程技术 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Biotechnology & Genetic Engineering Reviews Pub Date : 2024-12-01 Epub Date: 2023-05-05 DOI:10.1080/02648725.2023.2208453
Dongjie Wang, Yifeng Zhang, Dongyan Ren, Chunmei Meng, Liufeng Yang
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Abstract

Cervical cancer (CC) is a frequent disease in women whose development is related with miRNA disorder. MiR-377-5p plays a negative role in the development of some tumors, while few studies have revealed its role in CC. In this study, the functions of miR-377-5p in CC were investigated by bioinformatics. Briefly, the expression and survival curve of miR-377-5p in CC was analyzed with the Cancer Genome Atlas (TCGA) database, and the abundance of miR-377-5p in clinical samples and CC cell lines were measured by qRT-PCR. Moreover, the MicroRNA Data Integration Portal (miRDIP) database was used to predict targets of miR-377-5p, and the Database for Annotation Visualization and Integrated Discovery (David) was used for enrichment analysis of the functions of the miR-377-5p. The Search Tool for the Retrieval of Interacting Genes (STRING) database was used to screen the hub targets of miR-377-5p. Moreover, the Gene Expression Profiling Interactive Analysis (GEPIA) database was used to analyze the abundance of the genes in CC. Results showed that decreased miR-377-5p was found in the CC tissues and cell lines, and low miR-377-5p was connected with poor prognosis of patients. Besides, the targets of miR-377-5p were enriched in the PI3K/AKT, MAPK and RAS signaling pathways. Moreover, CDC42, FLT1, TPM3 and CAV1 were screened as hub nodes in the targets of miR-377-5p, and increased CDC42, FLT1, TPM3 and CAV1 also indicated the poor survival rates of the patients in the long term. In conclusion, this study suggests that miR-377-5p downregulation is a biomarker event for CC progression.

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生物信息学分析说明了 miR-377-5p 在宫颈癌中的功能。
宫颈癌(CC)是女性的常见病,其发病与 miRNA 紊乱有关。miR-377-5p在一些肿瘤的发展中起着负面作用,但很少有研究揭示它在CC中的作用。本研究通过生物信息学方法研究了miR-377-5p在CC中的功能。简言之,通过癌症基因组图谱(TCGA)数据库分析了miR-377-5p在CC中的表达和生存曲线,并通过qRT-PCR测定了miR-377-5p在临床样本和CC细胞系中的丰度。此外,还利用 MicroRNA Data Integration Portal(miRDIP)数据库预测了 miR-377-5p 的靶标,并利用注释可视化和综合发现数据库(David)对 miR-377-5p 的功能进行了富集分析。检索相互作用基因的搜索工具(STRING)数据库用于筛选 miR-377-5p 的枢纽靶标。此外,还利用基因表达谱交互分析(GEPIA)数据库分析了CC中基因的丰度。结果显示,在CC组织和细胞系中发现了miR-377-5p的减少,而低miR-377-5p与患者的不良预后有关。此外,miR-377-5p的靶标富集在PI3K/AKT、MAPK和RAS信号通路中。此外,CDC42、FLT1、TPM3 和 CAV1 被筛选为 miR-377-5p 靶点的枢纽节点,而 CDC42、FLT1、TPM3 和 CAV1 的增加也表明患者的长期生存率较低。总之,这项研究表明,miR-377-5p下调是CC进展的一个生物标志事件。
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来源期刊
Biotechnology & Genetic Engineering Reviews
Biotechnology & Genetic Engineering Reviews BIOTECHNOLOGY & APPLIED MICROBIOLOGY-GENETICS & HEREDITY
CiteScore
6.50
自引率
3.10%
发文量
33
期刊介绍: Biotechnology & Genetic Engineering Reviews publishes major invited review articles covering important developments in industrial, agricultural and medical applications of biotechnology.
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