Dynamic modelling predicts lactate and IL-1β as interventional targets in metabolic-inflammation-clock regulatory loop in glioma.

IF 1.5 4区 生物学 Q4 CELL BIOLOGY Integrative Biology Pub Date : 2023-04-11 DOI:10.1093/intbio/zyad008
Shalini Sharma, Pruthvi Gowda, Kirti Lathoria, Mithun K Mitra, Ellora Sen
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Abstract

In an attempt to understand the role of dysregulated circadian rhythm in glioma, our recent findings highlighted the existence of a feed-forward loop between tumour metabolite lactate, pro-inflammatory cytokine IL-1β and circadian CLOCK. To further elucidate the implication of this complex interplay, we developed a mathematical model that quantitatively describes this lactate dehydrogenase A (LDHA)-IL-1β-CLOCK/BMAL1 circuit and predicts potential therapeutic targets. The model was calibrated on quantitative western blotting data in two glioma cell lines in response to either lactate inhibition or IL-1β stimulation. The calibrated model described the experimental data well and most of the parameters were identifiable, thus the model was predictive. Sensitivity analysis identified IL-1β and LDHA as potential intervention points. Mathematical models described here can be useful to understand the complex interrelationship between metabolism, inflammation and circadian rhythm, and in designing effective therapeutic strategies. Our findings underscore the importance of including the circadian clock when developing pharmacological approaches that target aberrant tumour metabolism and inflammation. Insight box  The complex interplay of metabolism-inflammation-circadian rhythm in tumours is not well understood. Our recent findings provided evidence of a feed-forward loop between tumour metabolite lactate, pro-inflammatory cytokine IL-1β and circadian CLOCK/BMAL1 in glioma. To elucidate the implication of this complex interplay, we developed a mathematical model that quantitatively describes this LDHA-IL-1β-CLOCK/BMAL1 circuit and integrates experimental data to predict potential therapeutic targets. The study employed a multi-start optimization strategy and profile likelihood estimations for parameter estimation and assessing identifiability. The simulations are in reasonable agreement with the experimental data. Sensitivity analysis found LDHA and IL-1β as potential therapeutic points. Mathematical models described here can provide insights to understand the complex interrelationship between metabolism, inflammation and circadian rhythm, and in identifying effective therapeutic targets.

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动态模型预测乳酸和IL-1β是胶质瘤代谢-炎症时钟调节回路的干预靶点。
为了了解昼夜节律失调在胶质瘤中的作用,我们最近的发现强调了肿瘤代谢物乳酸、促炎细胞因子IL-1β和昼夜节律时钟之间存在一个前反馈回路。为了进一步阐明这种复杂相互作用的含义,我们建立了一个数学模型,定量描述了乳酸脱氢酶a (LDHA)-IL-1β-CLOCK/BMAL1回路,并预测了潜在的治疗靶点。该模型在两种胶质瘤细胞系中对乳酸抑制或IL-1β刺激的反应进行了定量western blotting数据校准。校正后的模型较好地描述了实验数据,大部分参数可识别,具有预测能力。敏感性分析发现IL-1β和LDHA是潜在的干预点。这里描述的数学模型有助于理解代谢、炎症和昼夜节律之间复杂的相互关系,并有助于设计有效的治疗策略。我们的发现强调了在开发针对异常肿瘤代谢和炎症的药理学方法时包括生物钟的重要性。肿瘤中代谢-炎症-昼夜节律的复杂相互作用尚未得到很好的理解。我们最近的研究结果为胶质瘤中肿瘤代谢物乳酸、促炎细胞因子IL-1β和昼夜节律时钟/BMAL1之间的前驱循环提供了证据。为了阐明这种复杂相互作用的含义,我们建立了一个数学模型,定量地描述了这种LDHA-IL-1β-CLOCK/BMAL1电路,并整合了实验数据来预测潜在的治疗靶点。研究采用多启动优化策略和剖面似然估计进行参数估计和可辨识性评估。模拟结果与实验数据吻合较好。敏感性分析发现LDHA和IL-1β是潜在的治疗点。这里描述的数学模型可以为理解代谢、炎症和昼夜节律之间复杂的相互关系以及确定有效的治疗靶点提供见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Integrative Biology
Integrative Biology 生物-细胞生物学
CiteScore
4.90
自引率
0.00%
发文量
15
审稿时长
1 months
期刊介绍: Integrative Biology publishes original biological research based on innovative experimental and theoretical methodologies that answer biological questions. The journal is multi- and inter-disciplinary, calling upon expertise and technologies from the physical sciences, engineering, computation, imaging, and mathematics to address critical questions in biological systems. Research using experimental or computational quantitative technologies to characterise biological systems at the molecular, cellular, tissue and population levels is welcomed. Of particular interest are submissions contributing to quantitative understanding of how component properties at one level in the dimensional scale (nano to micro) determine system behaviour at a higher level of complexity. Studies of synthetic systems, whether used to elucidate fundamental principles of biological function or as the basis for novel applications are also of interest.
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