Attack Site Density of a Highly-efficient PET Hydrolases.

IF 1 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Protein and Peptide Letters Pub Date : 2023-01-01 DOI:10.2174/0929866530666230509141807
Qiang Li, Wenhong Liu, Nannan Jing, Qingqing Li, Kang Yang, Jianzhuang Yao, Xia Wang
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Abstract

Introduction: Poly (ethylene terephthalate) (PET) is one of the most abundant polyester materials used in daily life and it is also one of the main culprits of environmental pollution. ICCG (F243I/D238C/S283C/Y127G) is an enzyme that performs four modifications on the leaf branch compost keratase (LCC). It shows excellent performance in the hydrolysis of PET and has a great potential in further applications.

Method: Here, we used ICCG to degrade PET particles of various sizes and use the density of attack sites (Γattack) and kinetic parameters to evaluate the effect of particle size on enzyme degradation efficiency. We are surprised to observe that there is a certain relationship between Km and Γattack. In order to further confirm the relationship, we obtained three different enzymes (Y95K, M166S and H218S) by site-directed mutagenesis on the basis of ICCG.

Result: The results confirmed that there was a negative correlation between Km and Γattack. In addition, we also found that increasing the affinity between the enzyme and the substrate does not necessarily lead to the increase of degradation rate.

Conclusion: These findings show that the granulation of PET and the selection of appropriate particle size are helpful to improve its industrial application value. At the same time, additional protein engineering to increase ICCG performance is realistic, but it can't be limited to enhance the affinity between enzyme and substrate.

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一种高效PET水解酶的攻击位点密度。
简介:聚对苯二甲酸乙二醇酯(PET)是日常生活中使用量最大的聚酯材料之一,也是造成环境污染的罪魁祸首之一。ICCG(F243I/D238C/S283C/Y127G)是一种对叶枝堆肥keratase(LCC)进行四种修饰的酶。它在PET的水解中表现出优异的性能,在进一步的应用中具有很大的潜力。方法:在这里,我们使用ICCG降解不同大小的PET颗粒,并使用攻击位点密度(Γ攻击)和动力学参数来评估颗粒大小对酶降解效率的影响。我们惊讶地观察到Km和Γ攻击之间存在一定的关系。为了进一步证实这种关系,我们在ICCG的基础上,通过定点突变获得了三种不同的酶(Y95K、M166S和H218S)。结果:Km与Γ攻击呈负相关。此外,我们还发现,增加酶与底物之间的亲和力并不一定会导致降解率的增加。结论:PET的造粒和选择合适的粒径有助于提高其工业应用价值。同时,额外的蛋白质工程来提高ICCG的性能是现实的,但它不能局限于增强酶和底物之间的亲和力。
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来源期刊
Protein and Peptide Letters
Protein and Peptide Letters 生物-生化与分子生物学
CiteScore
2.90
自引率
0.00%
发文量
98
审稿时长
2 months
期刊介绍: Protein & Peptide Letters publishes letters, original research papers, mini-reviews and guest edited issues in all important aspects of protein and peptide research, including structural studies, advances in recombinant expression, function, synthesis, enzymology, immunology, molecular modeling, and drug design. Manuscripts must have a significant element of novelty, timeliness and urgency that merit rapid publication. Reports of crystallization and preliminary structure determination of biologically important proteins are considered only if they include significant new approaches or deal with proteins of immediate importance, and preliminary structure determinations of biologically important proteins. Purely theoretical/review papers should provide new insight into the principles of protein/peptide structure and function. Manuscripts describing computational work should include some experimental data to provide confirmation of the results of calculations. Protein & Peptide Letters focuses on: Structure Studies Advances in Recombinant Expression Drug Design Chemical Synthesis Function Pharmacology Enzymology Conformational Analysis Immunology Biotechnology Protein Engineering Protein Folding Sequencing Molecular Recognition Purification and Analysis
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