最佳代谢途径激活

Diego A. Oyarz'un, B. Ingalls, R. Middleton, D. Kalamatianos
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引用次数: 2

摘要

本文讨论了生物化学途径激活过程中酶的时间分布。当由于环境条件的变化而需要生产某种生物分子时,途径激活就会出现。在生物系统通过进化过程得到优化的前提下,提出了一个具有生物学意义的最优控制问题。在这种设置中,酶浓度被认为是时间依赖的,并受到有限的总体酶生产能力的限制,而优化标准同时考虑了时间和资源的使用。使用几何参数,我们建立了解决方案的“砰砰”性质,并揭示了每个反应必须以相同的顺序顺序激活,因为它们出现在途径中。结果适用于广泛的酶动力学,包括但不限于质量作用,Michaelis-Menten和Hill方程动力学。
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Optimal metabolic pathway activation
This paper deals with temporal enzyme distribution in the activation of biochemical pathways. Pathway activation arises when production of a certain biomolecule is required due to changing environmental conditions. Under the premise that biological systems have been optimized through evolutionary processes, a biologically meaningful optimal control problem is posed. In this setup, the enzyme concentrations are assumed to be time dependent and constrained by a limited overall enzyme production capacity, while the optimization criterion accounts for both time and resource usage. Using geometric arguments we establish the bang-bang nature of the solution and reveal that each reaction must be sequentially activated in the same order as they appear in the pathway. The results hold for a broad range of enzyme dynamics which includes, but is not limited to, Mass Action, Michaelis-Menten and Hill Equation kinetics.
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