Yuichiro Yada, Takeshi Mita, R. Kanzaki, D. Bakkum, Hirokazu Takahashi
{"title":"利用贝叶斯非负矩阵分解识别分离皮质培养中不同的同步模式","authors":"Yuichiro Yada, Takeshi Mita, R. Kanzaki, D. Bakkum, Hirokazu Takahashi","doi":"10.1109/NER.2015.7146630","DOIUrl":null,"url":null,"abstract":"Synchrony in a neuronal network is not just a spontaneous event but rather a representation of inner information. In this point of view, the variety of synchrony patterns is considered to be related to inner capacity of the network. However, evaluating and comparing the variety of synchrony patterns, especially between different samples or different times, is difficult. In this paper, we proposed to identify the variety of synchrony based on Bayesian model selection. Hypothesizing that globally synchronized activity consists of partial synchrony, we attempted to identify reproducible-spatial pattern bases in spontaneous bursting activities of dissociated cortical cultures using Bayesian non-negative matrix factorization. Neuronal activity was recorded with high-density CMOS electrode arrays. Bayesian treatment provides evidence for selection of the number of bases based on marginal likelihood. We compared model evidence of the activity in juvenile and matured cultures. Our results suggested that the variety of synchrony patterns diversify through maturation.","PeriodicalId":137451,"journal":{"name":"2015 7th International IEEE/EMBS Conference on Neural Engineering (NER)","volume":"115 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2015-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Identification of diverse synchrony patterns in dissociated cortical culture using Bayesian non-negative matrix factorization\",\"authors\":\"Yuichiro Yada, Takeshi Mita, R. Kanzaki, D. Bakkum, Hirokazu Takahashi\",\"doi\":\"10.1109/NER.2015.7146630\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Synchrony in a neuronal network is not just a spontaneous event but rather a representation of inner information. In this point of view, the variety of synchrony patterns is considered to be related to inner capacity of the network. However, evaluating and comparing the variety of synchrony patterns, especially between different samples or different times, is difficult. In this paper, we proposed to identify the variety of synchrony based on Bayesian model selection. Hypothesizing that globally synchronized activity consists of partial synchrony, we attempted to identify reproducible-spatial pattern bases in spontaneous bursting activities of dissociated cortical cultures using Bayesian non-negative matrix factorization. Neuronal activity was recorded with high-density CMOS electrode arrays. Bayesian treatment provides evidence for selection of the number of bases based on marginal likelihood. We compared model evidence of the activity in juvenile and matured cultures. Our results suggested that the variety of synchrony patterns diversify through maturation.\",\"PeriodicalId\":137451,\"journal\":{\"name\":\"2015 7th International IEEE/EMBS Conference on Neural Engineering (NER)\",\"volume\":\"115 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2015-04-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2015 7th International IEEE/EMBS Conference on Neural Engineering (NER)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/NER.2015.7146630\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2015 7th International IEEE/EMBS Conference on Neural Engineering (NER)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/NER.2015.7146630","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Identification of diverse synchrony patterns in dissociated cortical culture using Bayesian non-negative matrix factorization
Synchrony in a neuronal network is not just a spontaneous event but rather a representation of inner information. In this point of view, the variety of synchrony patterns is considered to be related to inner capacity of the network. However, evaluating and comparing the variety of synchrony patterns, especially between different samples or different times, is difficult. In this paper, we proposed to identify the variety of synchrony based on Bayesian model selection. Hypothesizing that globally synchronized activity consists of partial synchrony, we attempted to identify reproducible-spatial pattern bases in spontaneous bursting activities of dissociated cortical cultures using Bayesian non-negative matrix factorization. Neuronal activity was recorded with high-density CMOS electrode arrays. Bayesian treatment provides evidence for selection of the number of bases based on marginal likelihood. We compared model evidence of the activity in juvenile and matured cultures. Our results suggested that the variety of synchrony patterns diversify through maturation.