{"title":"正负反馈耦合遗传电路中固有噪声诱导的状态跃迁","authors":"Pei Wang, Jinhu Lu, Yuhuan Zhang, M. Ogorzałek","doi":"10.1109/ISB.2011.6033178","DOIUrl":null,"url":null,"abstract":"It is well known that gene regulatory circuits can be modeled by the deterministic or stochastic approach. In this paper, a three-component coupled positive and negative feedback genetic circuit is firstly modeled deterministically by Hill kinetics. Then, a corresponding stochastic model is also investigated by using Gellispie's stochastic simulation. Some typical dynamical behaviors of the genetic circuit are further discussed based on the bifurcation analysis of deterministic system, including monostability, bistability, excitability, and oscillation. This paper aims to further investigate the effect of intrinsic noise inherently in stochastic models on steady states transition. It includes: i) For the parameters in deterministically bistable region, intrinsic noise may induce bistable switch for the not too large system volume, which can be observed by the generation of a new stable steady state; ii) For the parameters in deterministically excitable region, intrinsic noise may induce periodic switch for the very large system volume, which can be observed by the stabilization of another unstable steady state and the switching between two stable states; iii) When time delays are introduced in these two models, similar phenomena can be observed. The above results will certainly increase the understanding of the inner relationships between different modeling for the genetic circuit. It sheds some light on the real- world engineering applications, such as the engineering design of synthetic circuits.","PeriodicalId":355056,"journal":{"name":"2011 IEEE International Conference on Systems Biology (ISB)","volume":"49 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2011-10-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"6","resultStr":"{\"title\":\"Intrinsic noise induced state transition in coupled positive and negative feedback genetic circuit\",\"authors\":\"Pei Wang, Jinhu Lu, Yuhuan Zhang, M. Ogorzałek\",\"doi\":\"10.1109/ISB.2011.6033178\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"It is well known that gene regulatory circuits can be modeled by the deterministic or stochastic approach. In this paper, a three-component coupled positive and negative feedback genetic circuit is firstly modeled deterministically by Hill kinetics. Then, a corresponding stochastic model is also investigated by using Gellispie's stochastic simulation. Some typical dynamical behaviors of the genetic circuit are further discussed based on the bifurcation analysis of deterministic system, including monostability, bistability, excitability, and oscillation. This paper aims to further investigate the effect of intrinsic noise inherently in stochastic models on steady states transition. It includes: i) For the parameters in deterministically bistable region, intrinsic noise may induce bistable switch for the not too large system volume, which can be observed by the generation of a new stable steady state; ii) For the parameters in deterministically excitable region, intrinsic noise may induce periodic switch for the very large system volume, which can be observed by the stabilization of another unstable steady state and the switching between two stable states; iii) When time delays are introduced in these two models, similar phenomena can be observed. The above results will certainly increase the understanding of the inner relationships between different modeling for the genetic circuit. It sheds some light on the real- world engineering applications, such as the engineering design of synthetic circuits.\",\"PeriodicalId\":355056,\"journal\":{\"name\":\"2011 IEEE International Conference on Systems Biology (ISB)\",\"volume\":\"49 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2011-10-03\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"6\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2011 IEEE International Conference on Systems Biology (ISB)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/ISB.2011.6033178\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2011 IEEE International Conference on Systems Biology (ISB)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/ISB.2011.6033178","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Intrinsic noise induced state transition in coupled positive and negative feedback genetic circuit
It is well known that gene regulatory circuits can be modeled by the deterministic or stochastic approach. In this paper, a three-component coupled positive and negative feedback genetic circuit is firstly modeled deterministically by Hill kinetics. Then, a corresponding stochastic model is also investigated by using Gellispie's stochastic simulation. Some typical dynamical behaviors of the genetic circuit are further discussed based on the bifurcation analysis of deterministic system, including monostability, bistability, excitability, and oscillation. This paper aims to further investigate the effect of intrinsic noise inherently in stochastic models on steady states transition. It includes: i) For the parameters in deterministically bistable region, intrinsic noise may induce bistable switch for the not too large system volume, which can be observed by the generation of a new stable steady state; ii) For the parameters in deterministically excitable region, intrinsic noise may induce periodic switch for the very large system volume, which can be observed by the stabilization of another unstable steady state and the switching between two stable states; iii) When time delays are introduced in these two models, similar phenomena can be observed. The above results will certainly increase the understanding of the inner relationships between different modeling for the genetic circuit. It sheds some light on the real- world engineering applications, such as the engineering design of synthetic circuits.