秀丽隐杆线虫运动分析的自动跟踪系统

Yu-Hao Lee, Jian-Feng Chiu, An-Bang Liu, Hsin-Ru Liu, Wei-Min Liu
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引用次数: 0

摘要

秀丽隐杆线虫是神经科学和生物学的经典模式生物之一,其简单的神经系统和透明的身体为研究提供了有用的工具。高分辨率成像技术可以详细记录和分析秀丽隐杆线虫的行为,如运动、转弯、探测和跳跃。这些行为可以与其神经元活动和基因表达相关,从而帮助研究人员了解其行为和生理过程的调控机制。在这项研究中,我们提出了一个能够快速准确地收集多个秀丽隐杆线虫运动轨迹数据的自动跟踪系统,该系统采用骨骼提取和SORT多目标跟踪算法。此外,我们引入近似熵来量化运动特征的规律性和不可预测性,为秀丽隐杆线虫的运动轨迹和运动特征分析提供了一种新的方法。该系统也为相关微生物研究领域提供了方便、自动化的跟踪工具。
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An Automated Tracking System for Movement Analysis of C. elegans
C. elegans is one of the classic model organisms in neuroscience and biology, with its simple nervous system and transparent body serving as useful research tools. High-resolution imaging techniques allow for a detailed recording and analysis of C. elegans’ behaviors, such as locomotion, turning, probing, and jumping. These behaviors can be correlated with its neuronal activity and gene expression, thereby helping researchers understand the regulatory mechanisms of its behaviors and physiological processes. In this study, we propose an automated tracking system capable of rapidly and accurately collecting motion trajectory data of multiple C. elegans using skeletal extraction and SORT multi-object tracking algorithms. Furthermore, we introduce the use of Approximate Entropy to quantify the regularity and unpredictability of motion features, offering a novel approach for the analysis of C. elegans’ motion trajectories and movement features. This system also provides a convenient and automated tracking tool for related microorganism research fields.
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