Chien-An Wang, Sheng-Jui Huang, Yu-Cheng Li, Yi-Chang Lu
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引用次数: 0
摘要
在本文中，我们在Altera Stratix V FPGA上实现了一个液体关联计算器。利用来自高通量微阵列的数据，该硬件能够分析第三个基因的存在是否会影响现有两个基因之间的相关性。FPGA实现的运行时间和功耗分别仅为GPU版本所需的45.5%和8.14%。
An FPGA-Based Liquid Association Calculator for Genome-Wide Co-Expression Analysis
In this paper, we implement a Liquid Association calculator on an Altera Stratix V FPGA. Using data from high throughput microarrays, the hardware is capable of analyzing whether the presence of a third gene can affect the correlation between the existing two genes. The runtime and power consumption of our FPGA implementation is only 45.5% and 8.14%, respectively, of those required by the GPU version.
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