利用信息传递算法推断基因调控网络

Manohar Shamaiah, Sang Hyun Lee, H. Vikalo
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引用次数: 1

摘要

我们提出了一种信息传递技术在基因调控网络推断中的应用。将网络推理作为一个有约束的线性回归问题,采用一种计算效率高的分布式消息传递算法进行求解。所提出算法的性能在金标准数据集上进行了测试,并使用DREAM2挑战提供的指标进行了评估[1]。该算法的性能可与DREAM2挑战赛中取得最佳成绩的技术相媲美。
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Inference of gene-regulatory networks using message-passing algorithms
We present an application of message-passing techniques to gene regulatory network inference. The network inference is posed as a constrained linear regression problem, and solved by a distributed computationally efficient message-passing algorithm. Performance of the proposed algorithm is tested on gold standard data sets and evaluated using metrics provided by the DREAM2 challenge [1]. Performance of the proposed algorithm is comparable to that of the techniques which yielded the best results in the DREAM2 challenge competition.
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