{"title":"利用信息传递算法推断基因调控网络","authors":"Manohar Shamaiah, Sang Hyun Lee, H. Vikalo","doi":"10.1109/GENSIPS.2010.5719683","DOIUrl":null,"url":null,"abstract":"We present an application of message-passing techniques to gene regulatory network inference. The network inference is posed as a constrained linear regression problem, and solved by a distributed computationally efficient message-passing algorithm. Performance of the proposed algorithm is tested on gold standard data sets and evaluated using metrics provided by the DREAM2 challenge [1]. Performance of the proposed algorithm is comparable to that of the techniques which yielded the best results in the DREAM2 challenge competition.","PeriodicalId":388703,"journal":{"name":"2010 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)","volume":"1 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2010-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Inference of gene-regulatory networks using message-passing algorithms\",\"authors\":\"Manohar Shamaiah, Sang Hyun Lee, H. Vikalo\",\"doi\":\"10.1109/GENSIPS.2010.5719683\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"We present an application of message-passing techniques to gene regulatory network inference. The network inference is posed as a constrained linear regression problem, and solved by a distributed computationally efficient message-passing algorithm. Performance of the proposed algorithm is tested on gold standard data sets and evaluated using metrics provided by the DREAM2 challenge [1]. Performance of the proposed algorithm is comparable to that of the techniques which yielded the best results in the DREAM2 challenge competition.\",\"PeriodicalId\":388703,\"journal\":{\"name\":\"2010 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)\",\"volume\":\"1 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2010-11-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2010 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/GENSIPS.2010.5719683\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2010 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/GENSIPS.2010.5719683","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Inference of gene-regulatory networks using message-passing algorithms
We present an application of message-passing techniques to gene regulatory network inference. The network inference is posed as a constrained linear regression problem, and solved by a distributed computationally efficient message-passing algorithm. Performance of the proposed algorithm is tested on gold standard data sets and evaluated using metrics provided by the DREAM2 challenge [1]. Performance of the proposed algorithm is comparable to that of the techniques which yielded the best results in the DREAM2 challenge competition.