干细胞分化多维开关模型的蒙特卡罗模拟

M. Andrecut
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引用次数: 6

摘要

控制干细胞或祖细胞向特定功能方向分化的过程称为谱系规范。这个过程的一个重要特征是多谱系启动,这需要谱系特异性基因的同时表达。在承诺到某个谱系之前,已经观察到这些基因表现出其表达水平的中间值。多种祖细胞的多系分化已被报道,并已通过亚稳态的分叉来解释。在分化过程中,核心调控网络的动力学遵循一个分支,其中亚稳态(对应于祖细胞)被破坏,系统被迫在可能的发育选择中做出选择。虽然这种方法给出了细胞命运决定过程的合理解释,但它无法解释多谱系启动特征。在这里,我们描述了一个新的多维开关模型,该模型捕获了细胞命运决定过程和多谱系启动现象。我们证明了在对称相互作用情况下,系统表现出一种新型的简并分岔,其特征是一个包含无限个临界稳态的临界超平面。这个临界超平面可以解释为支持多谱系启动状态的祖先。此外,细胞命运的决定(多稳定性和切换行为)可以用临界超平面参数空间中的对称性破缺来解释。这些分析结果通过相应的化学主方程的蒙特卡罗模拟得到了证实。
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Monte-Carlo Simulation of a Multi-Dimensional Switch-Like Model of Stem Cell Differentiation
The process controlling the diferentiation of stem, or progenitor, cells into one specific functional direction is called lineage specification. An important characteristic of this process is the multi-lineage priming, which requires the simultaneous expression of lineage-specific genes. Prior to commitment to a certain lineage, it has been observed that these genes exhibit intermediate values of their expression levels. Multi-lineage differentiation has been reported for various progenitor cells, and it has been explained through the bifurcation of a metastable state. During the differentiation process the dynamics of the core regulatory network follows a bifurcation, where the metastable state, corresponding to the progenitor cell, is destabilized and the system is forced to choose between the possible developmental alternatives. While this approach gives a reasonable interpretation of the cell fate decision process, it fails to explain the multi-lineage priming characteristic. Here, we describe a new multi-dimensional switch-like model that captures both the process of cell fate decision and the phenomenon of multi-lineage priming. We show that in the symmetrical interaction case, the system exhibits a new type of degenerate bifurcation, characterized by a critical hyperplane, containing an infinite number of critical steady states. This critical hyperplane may be interpreted as the support for the multi-lineage priming states of the progenitor. Also, the cell fate decision (the multi-stability and switching behavior) can be explained by a symmetry breaking in the parameter space of this critical hyperplane. These analytical results are confirmed by Monte-Carlo simulations of the corresponding chemical master equations.
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