{"title":"微生物基因丰度反映了杉木人工林不同年龄梯度土壤氮矿化强度","authors":"Qingwu Zhan , Liang Chen , Huili Wu , Shuai Ouyang , Yelin Zeng , Xiangwen Deng , Yanting Hu , Wenhua Xiang","doi":"10.1016/j.ejsobi.2023.103570","DOIUrl":null,"url":null,"abstract":"<div><p><span><span>Stand development affects soil properties, nitrogen (N) dynamics, and </span>soil microbial community composition, but the question remains whether differences in N mineralization rates are mirrored by the abundance of relevant functional genes. In this study, we used the </span><sup>15</sup>N pool-dilution method to estimate N mineralization (<em>i.e.</em><span>, ammonification and nitrification) rates across a Chinese fir (</span><span><em>Cunninghamia lanceolata</em></span><span>) chronosequence, with stands aged 7, 16, 29, 36, and >80 years. Gene copy numbers of bacteria (</span><em>16S rRNA</em>), fungi (<em>ITS</em><span>), ammonia-oxidizing archaea (AOA) and bacteria (AOB) (</span><em>amoA</em><span>), denitrifiers (</span><em>nirS</em>, <em>nirK</em>), N<sub>2</sub> fixers (<em>nifH)</em> and organic N decomposers (<span><em>chiA</em></span><span>) were quantified by qPCR<span>. Gross ammonification and nitrification rates increased linearly with stand age in the topsoil (0–5 cm depth) and were strongly positively correlated with the abundance of the bacterial </span></span><em>16S rRNA</em> gene and AOA <em>amo</em>A, respectively. Higher net nitrification but lower NO<sub>3</sub><sup>−</sup> immobilization rates in older stands (32 and > 80 years) drove higher N availability for vegetation than in young stands (7 years). Older stands also had higher rates of NH<sub>4</sub><sup>+</sup> consumption than younger stands due to the increased fungal <em>ITS</em><span> abundance and higher microbial biomass N (MBN), and AOA </span><em>amoA</em> was more abundant and active than AOB <em>amoA</em> due to the more acid conditions characteristic of mature forests. Redundancy analysis showed that functional gene abundance was strongly affected by soil properties such as pH, NH<sub>4</sub><sup>+</sup>-N content, and MBN. We also found that microbial N storage potential was lower, and the NO<sub>3</sub><sup>−</sup><span>-N leaching and gaseous N loss potential were higher in older stands than in younger stands. Collectively, stand developmental stage gave rise to the observed spatial gradient of gross ammonification and nitrification rates by altering the abundance of microbial functional genes, which affected plantation productivity via its modulation of the supply of bioavailable N.</span></p></div>","PeriodicalId":12057,"journal":{"name":"European Journal of Soil Biology","volume":"119 ","pages":"Article 103570"},"PeriodicalIF":3.7000,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Microbial gene abundance mirrors soil nitrogen mineralization intensity across an age gradient in Chinese-fir plantations\",\"authors\":\"Qingwu Zhan , Liang Chen , Huili Wu , Shuai Ouyang , Yelin Zeng , Xiangwen Deng , Yanting Hu , Wenhua Xiang\",\"doi\":\"10.1016/j.ejsobi.2023.103570\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p><span><span>Stand development affects soil properties, nitrogen (N) dynamics, and </span>soil microbial community composition, but the question remains whether differences in N mineralization rates are mirrored by the abundance of relevant functional genes. In this study, we used the </span><sup>15</sup>N pool-dilution method to estimate N mineralization (<em>i.e.</em><span>, ammonification and nitrification) rates across a Chinese fir (</span><span><em>Cunninghamia lanceolata</em></span><span>) chronosequence, with stands aged 7, 16, 29, 36, and >80 years. Gene copy numbers of bacteria (</span><em>16S rRNA</em>), fungi (<em>ITS</em><span>), ammonia-oxidizing archaea (AOA) and bacteria (AOB) (</span><em>amoA</em><span>), denitrifiers (</span><em>nirS</em>, <em>nirK</em>), N<sub>2</sub> fixers (<em>nifH)</em> and organic N decomposers (<span><em>chiA</em></span><span>) were quantified by qPCR<span>. Gross ammonification and nitrification rates increased linearly with stand age in the topsoil (0–5 cm depth) and were strongly positively correlated with the abundance of the bacterial </span></span><em>16S rRNA</em> gene and AOA <em>amo</em>A, respectively. Higher net nitrification but lower NO<sub>3</sub><sup>−</sup> immobilization rates in older stands (32 and > 80 years) drove higher N availability for vegetation than in young stands (7 years). Older stands also had higher rates of NH<sub>4</sub><sup>+</sup> consumption than younger stands due to the increased fungal <em>ITS</em><span> abundance and higher microbial biomass N (MBN), and AOA </span><em>amoA</em> was more abundant and active than AOB <em>amoA</em> due to the more acid conditions characteristic of mature forests. Redundancy analysis showed that functional gene abundance was strongly affected by soil properties such as pH, NH<sub>4</sub><sup>+</sup>-N content, and MBN. We also found that microbial N storage potential was lower, and the NO<sub>3</sub><sup>−</sup><span>-N leaching and gaseous N loss potential were higher in older stands than in younger stands. Collectively, stand developmental stage gave rise to the observed spatial gradient of gross ammonification and nitrification rates by altering the abundance of microbial functional genes, which affected plantation productivity via its modulation of the supply of bioavailable N.</span></p></div>\",\"PeriodicalId\":12057,\"journal\":{\"name\":\"European Journal of Soil Biology\",\"volume\":\"119 \",\"pages\":\"Article 103570\"},\"PeriodicalIF\":3.7000,\"publicationDate\":\"2023-11-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"European Journal of Soil Biology\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1164556323001061\",\"RegionNum\":2,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"ECOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"European Journal of Soil Biology","FirstCategoryId":"97","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1164556323001061","RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ECOLOGY","Score":null,"Total":0}
Microbial gene abundance mirrors soil nitrogen mineralization intensity across an age gradient in Chinese-fir plantations
Stand development affects soil properties, nitrogen (N) dynamics, and soil microbial community composition, but the question remains whether differences in N mineralization rates are mirrored by the abundance of relevant functional genes. In this study, we used the 15N pool-dilution method to estimate N mineralization (i.e., ammonification and nitrification) rates across a Chinese fir (Cunninghamia lanceolata) chronosequence, with stands aged 7, 16, 29, 36, and >80 years. Gene copy numbers of bacteria (16S rRNA), fungi (ITS), ammonia-oxidizing archaea (AOA) and bacteria (AOB) (amoA), denitrifiers (nirS, nirK), N2 fixers (nifH) and organic N decomposers (chiA) were quantified by qPCR. Gross ammonification and nitrification rates increased linearly with stand age in the topsoil (0–5 cm depth) and were strongly positively correlated with the abundance of the bacterial 16S rRNA gene and AOA amoA, respectively. Higher net nitrification but lower NO3− immobilization rates in older stands (32 and > 80 years) drove higher N availability for vegetation than in young stands (7 years). Older stands also had higher rates of NH4+ consumption than younger stands due to the increased fungal ITS abundance and higher microbial biomass N (MBN), and AOA amoA was more abundant and active than AOB amoA due to the more acid conditions characteristic of mature forests. Redundancy analysis showed that functional gene abundance was strongly affected by soil properties such as pH, NH4+-N content, and MBN. We also found that microbial N storage potential was lower, and the NO3−-N leaching and gaseous N loss potential were higher in older stands than in younger stands. Collectively, stand developmental stage gave rise to the observed spatial gradient of gross ammonification and nitrification rates by altering the abundance of microbial functional genes, which affected plantation productivity via its modulation of the supply of bioavailable N.
期刊介绍:
The European Journal of Soil Biology covers all aspects of soil biology which deal with microbial and faunal ecology and activity in soils, as well as natural ecosystems or biomes connected to ecological interests: biodiversity, biological conservation, adaptation, impact of global changes on soil biodiversity and ecosystem functioning and effects and fate of pollutants as influenced by soil organisms. Different levels in ecosystem structure are taken into account: individuals, populations, communities and ecosystems themselves. At each level, different disciplinary approaches are welcomed: molecular biology, genetics, ecophysiology, ecology, biogeography and landscape ecology.