Noa Rigoudy, Gaspard Dussert, Abdelbaki Benyoub, Aurélien Besnard, Carole Birck, Jérome Boyer, Yoann Bollet, Yoann Bunz, Gérard Caussimont, Elias Chetouane, Jules Chiffard Carriburu, Pierre Cornette, Anne Delestrade, Nina De Backer, Lucie Dispan, Maden Le Barh, Jeanne Duhayer, Jean-François Elder, Jean-Baptiste Fanjul, Jocelyn Fonderflick, Nicolas Froustey, Mathieu Garel, William Gaudry, Agathe Gérard, Olivier Gimenez, Arzhela Hemery, Audrey Hemon, Jean-Michel Jullien, Daniel Knitter, Isabelle Malafosse, Mircea Marginean, Louise Ménard, Alice Ouvrier, Gwennaelle Pariset, Vincent Prunet, Julien Rabault, Malory Randon, Yann Raulet, Antoine Régnier, Romain Ribière, Jean-Claude Ricci, Sandrine Ruette, Yann Schneylin, Jérôme Sentilles, Nathalie Siefert, Bethany Smith, Guillaume Terpereau, Pierrick Touchet, Wilfried Thuiller, Antonio Uzal, Valentin Vautrain, Ruppert Vimal, Julian Weber, Bruno Spataro, Vincent Miele, Simon Chamaillé-Jammes
{"title":"DeepFaune计划:在相机陷阱图像中自动识别欧洲动物的合作努力","authors":"Noa Rigoudy, Gaspard Dussert, Abdelbaki Benyoub, Aurélien Besnard, Carole Birck, Jérome Boyer, Yoann Bollet, Yoann Bunz, Gérard Caussimont, Elias Chetouane, Jules Chiffard Carriburu, Pierre Cornette, Anne Delestrade, Nina De Backer, Lucie Dispan, Maden Le Barh, Jeanne Duhayer, Jean-François Elder, Jean-Baptiste Fanjul, Jocelyn Fonderflick, Nicolas Froustey, Mathieu Garel, William Gaudry, Agathe Gérard, Olivier Gimenez, Arzhela Hemery, Audrey Hemon, Jean-Michel Jullien, Daniel Knitter, Isabelle Malafosse, Mircea Marginean, Louise Ménard, Alice Ouvrier, Gwennaelle Pariset, Vincent Prunet, Julien Rabault, Malory Randon, Yann Raulet, Antoine Régnier, Romain Ribière, Jean-Claude Ricci, Sandrine Ruette, Yann Schneylin, Jérôme Sentilles, Nathalie Siefert, Bethany Smith, Guillaume Terpereau, Pierrick Touchet, Wilfried Thuiller, Antonio Uzal, Valentin Vautrain, Ruppert Vimal, Julian Weber, Bruno Spataro, Vincent Miele, Simon Chamaillé-Jammes","doi":"10.1007/s10344-023-01742-7","DOIUrl":null,"url":null,"abstract":"Camera traps have revolutionized how ecologists monitor wildlife, but their full potential is realized only when the hundreds of thousands of collected images can be readily classified with minimal human intervention. Deep learning classification models have allowed extraordinary progress towards this end, but trained models remain rare and are only now emerging for European fauna. We report on the first milestone of the DeepFaune initiative ( https://www.deepfaune.cnrs.fr ), a large-scale collaboration between more than 50 partners involved in wildlife research, conservation and management in France. We developed a classification model trained to recognize 26 species or higher-level taxa that are common in Europe, with an emphasis on mammals. The classification model achieved 0.97 validation accuracy and often > 0.95 precision and recall for many classes. These performances were generally higher than 0.90 when tested on independent out-of-sample datasets for which we used image redundancy contained in sequences of images. We implemented our model in a software to classify images stored locally on a personal computer, so as to provide a free, user-friendly, and high-performance tool for wildlife practitioners to automatically classify camera trap images. The DeepFaune initiative is an ongoing project, with new partners joining regularly, which allows us to continuously add new species to the classification model.","PeriodicalId":51044,"journal":{"name":"European Journal of Wildlife Research","volume":"56 1","pages":"0"},"PeriodicalIF":1.8000,"publicationDate":"2023-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"The DeepFaune initiative: a collaborative effort towards the automatic identification of European fauna in camera trap images\",\"authors\":\"Noa Rigoudy, Gaspard Dussert, Abdelbaki Benyoub, Aurélien Besnard, Carole Birck, Jérome Boyer, Yoann Bollet, Yoann Bunz, Gérard Caussimont, Elias Chetouane, Jules Chiffard Carriburu, Pierre Cornette, Anne Delestrade, Nina De Backer, Lucie Dispan, Maden Le Barh, Jeanne Duhayer, Jean-François Elder, Jean-Baptiste Fanjul, Jocelyn Fonderflick, Nicolas Froustey, Mathieu Garel, William Gaudry, Agathe Gérard, Olivier Gimenez, Arzhela Hemery, Audrey Hemon, Jean-Michel Jullien, Daniel Knitter, Isabelle Malafosse, Mircea Marginean, Louise Ménard, Alice Ouvrier, Gwennaelle Pariset, Vincent Prunet, Julien Rabault, Malory Randon, Yann Raulet, Antoine Régnier, Romain Ribière, Jean-Claude Ricci, Sandrine Ruette, Yann Schneylin, Jérôme Sentilles, Nathalie Siefert, Bethany Smith, Guillaume Terpereau, Pierrick Touchet, Wilfried Thuiller, Antonio Uzal, Valentin Vautrain, Ruppert Vimal, Julian Weber, Bruno Spataro, Vincent Miele, Simon Chamaillé-Jammes\",\"doi\":\"10.1007/s10344-023-01742-7\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Camera traps have revolutionized how ecologists monitor wildlife, but their full potential is realized only when the hundreds of thousands of collected images can be readily classified with minimal human intervention. Deep learning classification models have allowed extraordinary progress towards this end, but trained models remain rare and are only now emerging for European fauna. We report on the first milestone of the DeepFaune initiative ( https://www.deepfaune.cnrs.fr ), a large-scale collaboration between more than 50 partners involved in wildlife research, conservation and management in France. We developed a classification model trained to recognize 26 species or higher-level taxa that are common in Europe, with an emphasis on mammals. The classification model achieved 0.97 validation accuracy and often > 0.95 precision and recall for many classes. These performances were generally higher than 0.90 when tested on independent out-of-sample datasets for which we used image redundancy contained in sequences of images. We implemented our model in a software to classify images stored locally on a personal computer, so as to provide a free, user-friendly, and high-performance tool for wildlife practitioners to automatically classify camera trap images. 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The DeepFaune initiative: a collaborative effort towards the automatic identification of European fauna in camera trap images
Camera traps have revolutionized how ecologists monitor wildlife, but their full potential is realized only when the hundreds of thousands of collected images can be readily classified with minimal human intervention. Deep learning classification models have allowed extraordinary progress towards this end, but trained models remain rare and are only now emerging for European fauna. We report on the first milestone of the DeepFaune initiative ( https://www.deepfaune.cnrs.fr ), a large-scale collaboration between more than 50 partners involved in wildlife research, conservation and management in France. We developed a classification model trained to recognize 26 species or higher-level taxa that are common in Europe, with an emphasis on mammals. The classification model achieved 0.97 validation accuracy and often > 0.95 precision and recall for many classes. These performances were generally higher than 0.90 when tested on independent out-of-sample datasets for which we used image redundancy contained in sequences of images. We implemented our model in a software to classify images stored locally on a personal computer, so as to provide a free, user-friendly, and high-performance tool for wildlife practitioners to automatically classify camera trap images. The DeepFaune initiative is an ongoing project, with new partners joining regularly, which allows us to continuously add new species to the classification model.
期刊介绍:
European Journal of Wildlife Research focuses on all aspects of wildlife biology. Main areas are: applied wildlife ecology; diseases affecting wildlife population dynamics, conservation, economy or public health; ecotoxicology; management for conservation, hunting or pest control; population genetics; and the sustainable use of wildlife as a natural resource. Contributions to socio-cultural aspects of human-wildlife relationships and to the history and sociology of hunting will also be considered.