中国眼镜蛇Naja atra的基因组组装与注释。

GigaByte (Hong Kong, China) Pub Date : 2023-11-20 eCollection Date: 2023-01-01 DOI:10.46471/gigabyte.99
Jiangang Wang, Yuxin Wu, Shiqing Wang, Weiwu Mu, Wenmei Zeng, Xi Chen, Kangfeng Jiang, Liangyu Yang, Guohai Hu, Fengping He
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引用次数: 0

摘要

在中国,有65种毒蛇,其中中国眼镜蛇(Chinese Cobra Naja atra)最为突出,也是人类被蛇咬伤的主要原因。此外,atra在某些地区是受保护的动物,因为它已被国际自然保护联盟列为易危物种。近年来,由于蛇毒的医学价值,蛇毒组学受到越来越多的研究兴趣。特别是,基因组资源对于理解毒液产生的分子机制至关重要。在这里,我们报告了一个高度连续的N. atra基因组组装,基于来自中国安徽黄山的蛇样本。该基因组的大小为1.67 Gb,其重复序列含量占整个基因组的37.8%。共有26432个功能基因被注释。这一数据为研究北甲的毒液分泌提供了重要的资源。这也可能为该物种的保护提供指导。
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The genome assembly and annotation of the Chinese cobra, Naja atra.

In China, 65 types of venomous snakes exist, with the Chinese Cobra Naja atra being prominent and a major cause of snakebites in humans. Furthermore, N. atra is a protected animal in some areas, as it has been listed as vulnerable by the International Union for Conservation of Nature. Recently, due to the medical value of snake venoms, venomics has experienced growing research interest. In particular, genomic resources are crucial for understanding the molecular mechanisms of venom production. Here, we report a highly continuous genome assembly of N. atra, based on a snake sample from Huangshan, Anhui, China. The size of this genome is 1.67 Gb, while its repeat content constitutes 37.8% of the genome. A total of 26,432 functional genes were annotated. This data provides an essential resource for studying venom production in N. atra. It may also provide guidance for the protection of this species.

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来源期刊
CiteScore
2.60
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0.00%
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审稿时长
5 weeks
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