细胞侵袭偏微分方程模型的参数可辨识性及模型选择

Yue LiuMathematical Institute, University of Oxford, Kevin SuhDepartment of Chemical and Biological Engineering, Princeton University, Philip K. MainiMathematical Institute, University of Oxford, Daniel J. CohenDepartment of Chemical and Biological Engineering, Princeton UniversityDepartment of Mechanical and Aerospace Engineering, Princeton University, Ruth E. BakerMathematical Institute, University of Oxford
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引用次数: 0

摘要

当采用机制模型来研究生物系统时,实际参数的可识别性对于在广泛的场景中进行预测以及理解驱动系统行为的机制非常重要。我们认为参数可识别性应该与拟合优度和模型复杂性一起作为模型选择的标准。为了证明这一点,我们使用了一种似是而非的方法来研究Fisher- KPP模型的四种扩展的参数可识别性,给出了细胞入侵试验的实验数据。我们表明,更复杂的模型往往难以识别,参数估计对实验过程中的细微差异更敏感,并且需要更多的数据才能实际识别。可识别性分析的结果可以为模型选择、数据收集和实验设计提供信息。
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Parameter identifiability and model selection for partial differential equation models of cell invasion
When employing a mechanistic model to study biological systems, practical parameter identifiability is important for making predictions in a wide range of scenarios, as well as for understanding the mechanisms driving the system behaviour. We argue that parameter identifiability should be considered alongside goodness-of-fit and model complexity as criteria for model selection. To demonstrate, we use a profile likelihood approach to investigate parameter identifiability for four extensions of the Fisher--KPP model, given experimental data from a cell invasion assay. We show that more complicated models tend to be less identifiable, with parameter estimates being more sensitive to subtle differences in experimental procedures, and require more data to be practically identifiable. The results from identifiability analysis can inform model selection, as well as data collection and experimental design.
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