鼠王蛇(Elaphe carinata)的基因组组装和注释。

GigaByte (Hong Kong, China) Pub Date : 2023-12-07 eCollection Date: 2023-01-01 DOI:10.46471/gigabyte.101
Jiale Fan, Ruyi Huang, Diancheng Yang, Yanan Gong, Zhangbo Cui, Xinge Wang, Zicheng Su, Jing Yu, Yi Zhang, Tierui Zhang, Zhihao Jiang, Tianming Lan, He Wang, Song Huang
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引用次数: 0

摘要

王鼠蛇(Elaphe carinata)是一种常见的大型无毒蛇,广泛分布于东南亚和东亚。它是一种重要的经济养殖物种。作为一种无毒蛇,王鼠蛇比眼镜蛇和蝮蛇等毒蛇的毒性更强。然而,鼠王蛇的免疫和消化机制仍不清楚。尽管鼠王蛇在经济和研究方面具有重要意义,但我们缺乏有利于毒理学、系统地理学和免疫遗传学研究的基因组资源。在这里,我们利用单管长片段读数测序技术首次获得了来自中国安徽省黄山市的大王鼠蛇的连续基因组。基因组大小为1.56 GB,支架N50为6.53M。基因组总长度约为 621 Mb,重复率为 42.26%。此外,我们还预测了 22,339 个蛋白质编码基因,包括 22,065 个有功能注释的基因。我们的基因组是对现有蛇类基因组的有益补充。
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Genome assembly and annotation of the king ratsnake, Elaphe carinata.

The king ratsnake (Elaphe carinata) of the genus Elaphe is a common large, non-venomous snake widely distributed in Southeast and East Asia. It is an economically important farmed species. As a non-venomous snake, the king ratsnake predates venomous snakes, such as cobras and pit vipers. However, the immune and digestive mechanisms of the king ratsnake remain unclear. Despite their economic and research importance, we lack genomic resources that would benefit toxicology, phylogeography, and immunogenetics studies. Here, we used single-tube long fragment read sequencing to generate the first contiguous genome of a king ratsnake from Huangshan City, Anhui province, China. The genome size is 1.56 GB with a scaffold N50 of 6.53M. The total length of the genome is approximately 621 Mb, while the repeat content is 42.26%. Additionally, we predicted 22,339 protein-coding genes, including 22,065 with functional annotations. Our genome is a potentially useful addition to those available for snakes.

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CiteScore
2.60
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