单模态概率分布模型在芽殖酵母形态表型中的应用

IF 2.4 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY FEMS yeast research Pub Date : 2024-01-09 DOI:10.1093/femsyr/foad056
Yoshikazu Ohya, Farzan Ghanegolmohammadi, Kaori Itto-Nakama
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引用次数: 0

摘要

对出芽酵母进行形态学表型分析有助于极大地阐明基因的功能,加深我们对细胞功能网络的了解。了解细胞形态并进行定量形态分析(QMA)是必要的,但为形态表型分配精确的数值一直是个挑战。为此,我们最近开发了单模态形态数据图像分析管道。如果实验值的分布遵循单模态模式,所有真实值都可以通过应用适当的概率分布从理论上估算出来。这一可靠的管道可进行多种下游分析,包括检测细微的形态差异、选择形态相似的突变株、基于形态的聚类以及形态多样性研究。除基础研究外,酵母细胞形态分析还可用于应用研究,监测育种和发酵过程,控制酵母细胞的发酵活性。
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Application of unimodal probability distribution models for morphological phenotyping of budding yeast.

Morphological phenotyping of the budding yeast Saccharomyces cerevisiae has helped to greatly clarify the functions of genes and increase our understanding of cellular functional networks. It is necessary to understand cell morphology and perform quantitative morphological analysis (QMA) but assigning precise values to morphological phenotypes has been challenging. We recently developed the Unimodal Morphological Data image analysis pipeline for this purpose. All true values can be estimated theoretically by applying an appropriate probability distribution if the distribution of experimental values follows a unimodal pattern. This reliable pipeline allows several downstream analyses, including detection of subtle morphological differences, selection of mutant strains with similar morphology, clustering based on morphology, and study of morphological diversity. In addition to basic research, morphological analyses of yeast cells can also be used in applied research to monitor breeding and fermentation processes and control the fermentation activity of yeast cells.

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来源期刊
FEMS yeast research
FEMS yeast research 生物-生物工程与应用微生物
CiteScore
5.70
自引率
6.20%
发文量
54
审稿时长
1 months
期刊介绍: FEMS Yeast Research offers efficient publication of high-quality original Research Articles, Mini-reviews, Letters to the Editor, Perspectives and Commentaries that express current opinions. The journal will select for publication only those manuscripts deemed to be of major relevance to the field and generally will not consider articles that are largely descriptive without insights on underlying mechanism or biology. Submissions on any yeast species are welcome provided they report results within the scope outlined below and are of significance to the yeast field.
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