将 Janus 激酶抑制剂作为严重急性呼吸系统综合征冠状病毒 2 主要蛋白酶抑制剂的潜在治疗用途的硅学方法

IF 0.1 Q4 MEDICINE, GENERAL & INTERNAL Journal of the Scientific Society Pub Date : 2023-09-01 DOI:10.4103/jss.jss_156_22
Shankar Gharge, Sushmita I. Hiremath, Akshata Menasinakai, Mahesh Palled
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Hence in 2020, successful crystallized structure of the main protease (Mpro) from COVID-19 has been structured and repositioned in the Protein Data Bank (PDB), which is a potential target for the inhibition of CoV replication. Aims and Objectives: As there are no computational studies have been reported on computer based screening on Janus Kinase inhibitors to investigate its drug likeness properties and ADME profile along with some toxicity investigations. Hence an attempt has been made to study drug likeness properties and ADME profile of selected Janus Kinase inhibitors using computer applications and servers. Materials and Methods: The admetSAR and SwissADME servers are used for describing the molecular properties, which is important for a drug pharmacokinetics in the human body and molecular docking study to predict hypothetical binding affinity of protein is mainly done by PyRx 0.8 and visualizied by Biovia Discovery Studio 2021. 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引用次数: 0

摘要

背景:冠状病毒病 2019(COVID-19)是由 SARS 冠状病毒 2(SARS CoV-2)引起的一种传染性呼吸道疾病。有多篇报道称,在COVID-19患者中使用JAK(Janus激酶)抑制剂可减少有创机械通气的使用并提高存活率。有几项正在进行的随机对照试验正在评估Janus激酶抑制剂(JAK i)对重症COVID-19的治疗潜力。COVID-19相关疾病的结构、代谢途径和病理生理学对于确定可能的药物靶点非常重要。因此,在2020年,COVID-19的主要蛋白酶(Mpro)的结晶结构被成功构建并重新定位在蛋白质数据库(PDB)中,这是抑制CoV复制的一个潜在靶点。目的和目标:目前还没有关于基于计算机筛选 Janus 激酶抑制剂的计算研究报告,以研究其药物相似特性和 ADME 特征以及一些毒性调查。因此,我们尝试使用计算机应用程序和服务器来研究选定的 Janus 激酶抑制剂的药物相似性和 ADME 特征。材料与方法:admetSAR和SwissADME服务器用于描述分子特性,这对药物在人体内的药代动力学非常重要;分子对接研究主要通过PyRx 0.8来预测蛋白质的假设结合亲和力,并通过Biovia Discovery Studio 2021进行可视化。结果:我们选择了一些 Janus 激酶抑制剂(JAK i)作为配体,如 Baricitinib、Upadacitinib、Oclacitinib、Tofacitinib、Ruxolitinib、Fedratinib、Peficitinib 和 Filgotinib,发现所有抑制剂的结合能得分分别为 -6.8、-6.8、-6.7、-5.7、-6.8、-7.7、-6.7 和 -7.8 kcal/mol。结论本研究的对接分析表明了几种化合物的抑制潜力,按亲和力排序,Filgotinib > Fedratinib > Ruxolitinib、Upadacitinib、Baricitinib > Oclacitinib、Peficitinib > Tofacitinib是最值得推荐的Janus激酶抑制剂(JAKI),它们是COVID-19 M pro的潜在抑制剂,应在今后的研究中加以探索。
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In silico method potential therapeutic use of Janus Kinase inhibitors as severe acute respiratory syndrome coronavirus 2 main protease inhibitors
Background: Coronavirus disease 2019 (COVID-19), it is an infectious respiratory disease caused by SARS corona virus 2 (SARS CoV-2). There are several reports of using JAK (Janus kinase)-inhibitors in persons with COVID-19 and the use of these decreased the use of invasive mechanical ventilation and increased survival. There are several ongoing and randomized controlled trials evaluating the therapeutic potential of Janus Kinase inhibitors (JAK i) in severe COVID-19. The structure, metabolic pathways and pathophysiology of COVID-19 associated diseases is important to identify possible drug targets. Hence in 2020, successful crystallized structure of the main protease (Mpro) from COVID-19 has been structured and repositioned in the Protein Data Bank (PDB), which is a potential target for the inhibition of CoV replication. Aims and Objectives: As there are no computational studies have been reported on computer based screening on Janus Kinase inhibitors to investigate its drug likeness properties and ADME profile along with some toxicity investigations. Hence an attempt has been made to study drug likeness properties and ADME profile of selected Janus Kinase inhibitors using computer applications and servers. Materials and Methods: The admetSAR and SwissADME servers are used for describing the molecular properties, which is important for a drug pharmacokinetics in the human body and molecular docking study to predict hypothetical binding affinity of protein is mainly done by PyRx 0.8 and visualizied by Biovia Discovery Studio 2021. Results: We have selected few Janus Kinase inhibitors (JAK i) as ligands such as Baricitinib, Upadacitinib, Oclacitinib, Tofacitinib, Ruxolitinib, Fedratinib, Peficitinib and Filgotinib and binding energy score of all inhibitors found to be -6.8, -6.8, -6.7, -5.7, -6.8, -7.7, -6.7 and -7.8 kcal/mol, respectively. Conclusion: The docking analysis in the present study showed the inhibition potential of several compounds, ranked by affinity Filgotinib > Fedratinib >Ruxolitinib, Upadacitinib, Baricitinib > Oclacitinib, Peficitinib > Tofacitinib which were the most recommended Janus Kinase inhibitor (JAKI) found as potential inhibitors of COVID-19 M pro, which should be explored in future research.
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Journal of the Scientific Society
Journal of the Scientific Society MEDICINE, GENERAL & INTERNAL-
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33.30%
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