神经与环境的相互作用:时间敏感问题

IF 2.1 4区 医学 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY Frontiers in Computational Neuroscience Pub Date : 2023-12-19 DOI:10.3389/fncom.2023.1302010
Azzurra Invernizzi, Stefano Renzetti, Elza Rechtman, Claudia Ambrosi, Lorella Mascaro, Daniele Corbo, Roberto Gasparotti, Cheuk Y. Tang, Donald R. Smith, Roberto G. Lucchini, Robert O. Wright, Donatella Placidi, Megan K. Horton, Paul Curtin
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引用次数: 0

摘要

引言静息状态(rs)神经生理学动态评估依赖于对感觉、知觉和行为环境的控制,以最大限度地减少变异性并排除测试条件下激活的混杂源。在此,我们研究了时间差环境输入(特别是扫描前几个月的金属暴露)如何影响使用 Rs 功能磁共振成像(rs-fMRI)测量的功能动态。方法我们实施了一个可解释的 XGBoost-shapley加法解释(SHAP)模型,该模型整合了来自多种暴露生物标记物的信息,以预测典型发育青少年的 Rs 动态。在参加金属暴露对公共健康影响(PHIME)研究的 124 名参与者(53% 为女性,年龄在 13-25 岁之间)中,我们测量了生物基质(唾液、头发、指甲、脚趾甲、血液和尿液)中六种金属(锰、铅、铬、铜、镍和锌)的浓度,并获得了 rs-fMRI 扫描。利用图论指标,我们计算了 111 个脑区(哈佛牛津地图集)的全局效率(GE)。我们使用了一个基于集合梯度提升的预测模型来预测金属生物标记物的全局效率,并对年龄和生理性别进行了调整。SHAP 评分用于评估特征的重要性。我们利用化学暴露作为输入的模型所测出的 rs 动态与预测的 rs 动态具有显著的相关性(p < 0.001,r = 0.36)。讨论我们的研究结果表明,rs 动态的一个重要组成部分(约占观察到的 GE 变异的 13%)是由最近的金属暴露驱动的。这些发现强调,在评估和分析 rs 功能连接性时,需要估计和控制过去和当前化学暴露的影响。
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Neuro-environmental interactions: a time sensitive matter
Introduction

The assessment of resting state (rs) neurophysiological dynamics relies on the control of sensory, perceptual, and behavioral environments to minimize variability and rule-out confounding sources of activation during testing conditions. Here, we investigated how temporally-distal environmental inputs, specifically metal exposures experienced up to several months prior to scanning, affect functional dynamics measured using rs functional magnetic resonance imaging (rs-fMRI).

Methods

We implemented an interpretable XGBoost-shapley additive explanation (SHAP) model that integrated information from multiple exposure biomarkers to predict rs dynamics in typically developing adolescents. In 124 participants (53% females, ages, 13–25 years) enrolled in the public health impact of metals exposure (PHIME) study, we measured concentrations of six metals (manganese, lead, chromium, copper, nickel, and zinc) in biological matrices (saliva, hair, fingernails, toenails, blood, and urine) and acquired rs-fMRI scans. Using graph theory metrics, we computed global efficiency (GE) in 111 brain areas (Harvard Oxford atlas). We used a predictive model based on ensemble gradient boosting to predict GE from metal biomarkers, adjusting for age and biological sex.

Results

Model performance was evaluated by comparing predicted versus measured GE. SHAP scores were used to evaluate feature importance. Measured versus predicted rs dynamics from our model utilizing chemical exposures as inputs were significantly correlated (p < 0.001, r = 0.36). Lead, chromium, and copper contributed most to the prediction of GE metrics.

Discussion

Our results indicate that a significant component of rs dynamics, comprising approximately 13% of observed variability in GE, is driven by recent metal exposures. These findings emphasize the need to estimate and control for the influence of past and current chemical exposures in the assessment and analysis of rs functional connectivity.

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来源期刊
Frontiers in Computational Neuroscience
Frontiers in Computational Neuroscience MATHEMATICAL & COMPUTATIONAL BIOLOGY-NEUROSCIENCES
CiteScore
5.30
自引率
3.10%
发文量
166
审稿时长
6-12 weeks
期刊介绍: Frontiers in Computational Neuroscience is a first-tier electronic journal devoted to promoting theoretical modeling of brain function and fostering interdisciplinary interactions between theoretical and experimental neuroscience. Progress in understanding the amazing capabilities of the brain is still limited, and we believe that it will only come with deep theoretical thinking and mutually stimulating cooperation between different disciplines and approaches. We therefore invite original contributions on a wide range of topics that present the fruits of such cooperation, or provide stimuli for future alliances. We aim to provide an interactive forum for cutting-edge theoretical studies of the nervous system, and for promulgating the best theoretical research to the broader neuroscience community. Models of all styles and at all levels are welcome, from biophysically motivated realistic simulations of neurons and synapses to high-level abstract models of inference and decision making. While the journal is primarily focused on theoretically based and driven research, we welcome experimental studies that validate and test theoretical conclusions. Also: comp neuro
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