基于网络药理学分析和深度学习技术的达帕格列净通过 PI3K-Akt 信号通路对抗 2 型糖尿病的药理机制探索

Jie Wu, Yufan Chen, Shuai Shi, Junru Liu, Fen Zhang, Xingxing Li, Xizhi Liu, Guoliang Hu, Yang Dong
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引用次数: 0

摘要

背景达帕格列净常用于治疗2型糖尿病(T2DM)。然而,有关达帕格列净抗T2DM具体机制的研究仍然很少:本研究旨在探讨达帕格列净抗T2DM的内在机制:达帕格列净相关靶点来自 CTD、SwissTargetPrediction 和 SuperPred。T2DM相关靶点来自GeneCards和DigSee。VennDiagram 用于获取达帕格列净与 T2DM 的重叠靶标。使用 clusterProfiler 进行 GO 和 KEGG 分析。利用STRING数据库和Cytoscape建立了PPI网络,并使用CytoHubba的degree、maximal clique centrality(MCC)和edge percolated component(EPC)算法筛选出前30个靶点。三种算法筛选出的前 30 个靶标与核心通路相关靶标相交,得到关键靶标。利用DeepPurpose评估达帕格列净与关键靶点的结合亲和力:结果:总共获得了 155 个达帕利洛嗪与 T2DM 的重叠靶点。GO和KEGG分析显示,这些靶点主要富集于糖尿病并发症中的多肽反应、膜微域、蛋白丝氨酸/苏氨酸/酪氨酸激酶活性、PI3K-Akt信号通路、MAPK信号通路和AGE-RAGE信号通路。AKT1、PIK3CA、NOS3、表皮生长因子受体、MAPK1、MAPK3、HSP90AA1、MTOR、RELA、NFKB1、IKBKB、ITGB1和TP53是关键靶点,主要与氧化应激、内皮功能和自噬有关。通过DeepPurpose算法,AKT1、HSP90AA1、RELA、ITGB1和TP53被确定为达帕格列净的前5大抗靶点:结论:达帕格列净可能主要通过PI3K-Akt信号转导靶向AKT1、HSP90AA1、RELA、ITGB1和TP53来治疗T2DM。
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Exploration of Pharmacological Mechanisms of Dapagliflozin against Type 2 Diabetes Mellitus through PI3K-Akt Signaling Pathway based on Network Pharmacology Analysis and Deep Learning Technology.

Background: Dapagliflozin is commonly used to treat type 2 diabetes mellitus (T2DM). However, research into the specific anti-T2DM mechanisms of dapagliflozin remains scarce.

Objective: This study aimed to explore the underlying mechanisms of dapagliflozin against T2DM.

Methods: Dapagliflozin-associated targets were acquired from CTD, SwissTargetPrediction, and SuperPred. T2DM-associated targets were obtained from GeneCards and DigSee. VennDiagram was used to obtain the overlapping targets of dapagliflozin and T2DM. GO and KEGG analyses were performed using clusterProfiler. A PPI network was built by STRING database and Cytoscape, and the top 30 targets were screened using the degree, maximal clique centrality (MCC), and edge percolated component (EPC) algorithms of CytoHubba. The top 30 targets screened by the three algorithms were intersected with the core pathway-related targets to obtain the key targets. DeepPurpose was used to evaluate the binding affinity of dapagliflozin with the key targets.

Results: In total, 155 overlapping targets of dapagliflozin and T2DM were obtained. GO and KEGG analyses revealed that the targets were primarily enriched in response to peptide, membrane microdomain, protein serine/threonine/tyrosine kinase activity, PI3K-Akt signaling pathway, MAPK signaling pathway, and AGE-RAGE signaling pathway in diabetic complications. AKT1, PIK3CA, NOS3, EGFR, MAPK1, MAPK3, HSP90AA1, MTOR, RELA, NFKB1, IKBKB, ITGB1, and TP53 were the key targets, mainly related to oxidative stress, endothelial function, and autophagy. Through the DeepPurpose algorithm, AKT1, HSP90AA1, RELA, ITGB1, and TP53 were identified as the top 5 anti-targets of dapagliflozin.

Conclusion: Dapagliflozin might treat T2DM mainly by targeting AKT1, HSP90AA1, RELA, ITGB1, and TP53 through PI3K-Akt signaling.

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