揭示复杂的相互作用:分子对接:关于当前形势、即将面临的困难、即将采取的举措和观点的全面综述

Shashank Tiwari, Kartikay Prakash
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摘要

由两个或更多相互作用的分子产生的结构复合物的计算机建模被称为分子对接。它是计算机辅助药物设计和结构分子生物学中不可或缺的工具。利用这项技术,可以对大量化合物库进行数字筛选,并可根据配体如何影响靶标还原的结构假设对结果进行分级。最近,在结构洞察力的推动下,抗感染药物的合成取得了进展,这使得计算机辅助药物设计得以应用于寻求基于机制或结构的创新药物。分子对接是药物开发过程中的一个重要阶段,因为它能确定分子耦合在一起时的最佳位置,并预测两个分子对接后的结合效果。输入结构的设计也至关重要,其结果要通过采样方法和评分系统进行评估。最近开发的对接软件 Local Move Monte Carlo 为定制受体对接策略提供了有力的选择。对接是一种确定配体和蛋白质如何相互作用的技术。它结构合理,与计算机辅助药物设计兼容。成功的对接可以发现高维空间并对功能利用率进行排序,从而得出可接受的候选对接等级。它还可用于筛选庞大的分子库,并为这一过程提供结构假设。
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UNREVEALING THE COMPLEX INTERPLAY: MOLECULAR DOCKING: A COMPREHENSIVE REVIEW ON CURRENT SCENARIO, UPCOMING DIFFICULTIES, FORTHCOMING INITIATIVES, AND VIEWPOINTS
The computer modelling of structural complexes generated from two or more interacting molecules are referred to as molecular docking. It is an indispensable tool in computer-aided drug design and structural molecular biology. Using this technology, large libraries of compounds may be digitally screened, and the results can be graded along with structural assumptions about how the ligands impact the target's reduction. Recent advances in the synthesis of anti-infectious medicines prompted by structural insights have enabled the application of computer-assisted drug design in the quest for innovative mechanism-or structure-based drugs. Molecular docking is an important phase in the drug development process because it determines the best positions for molecules to occupy when they are coupled together and predicts how effectively two molecules will bind once they have been docked. The input structure's design is also critical, and the results are assessed using sampling methods and scoring systems. The recently developed docking software Local Move Monte Carlo provides a strong choice for customizable receptor docking strategies. Docking is a technique for determining how ligands and proteins interact. It is structurally sound and compatible with computer-assisted medication design. Successful docking discovers high-dimensional spaces and ranks function utilisation, resulting in a candidate docking rating that is acceptable. It may also be used to screen vast libraries of molecules and offer structural hypotheses for the process.
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