通过泛癌症综合分析确定 SLC12A8 为有价值的预后生物标记物和免疫治疗靶点

IF 2.6 3区 生物学 Q2 GENETICS & HEREDITY Gene Pub Date : 2024-01-26 DOI:10.1016/j.gene.2024.148211
Dongmin Yu , Hanhongfeng Ma , Deping Li , Huiyang Tang , Wei Li , Meifang Li
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引用次数: 0

摘要

溶质运载家族 12 成员 8(SLC12A8)是一种烟酰胺单核苷酸转运体。尽管有新的证据支持其可能参与肿瘤发生,但尚未对 SLC12A8 进行系统的泛癌症分析。因此,本研究旨在探索 SLC12A8 对预后的影响,并评估其在 33 种不同肿瘤类型中可能具有的免疫相关功能。研究人员从 TCGA、GTEx、Broad Institute CCLE、TISCH、HPA 和 GDSC2 数据库中获取了多个数据集。在获得这些数据后,我们进行了生物信息学分析,以评估 SLC12A8 在癌症发病机制中的潜在参与。这些分析的重点是研究 SLC12A8 与各种肿瘤类型的预后、药物敏感性、化疗反应、免疫检查点 (ICP)、免疫细胞浸润和免疫疗法疗效之间的关系。此外,研究人员还采用了 EdU 试验、伤口愈合试验和透孔试验等实验方法来评估细胞的增殖能力和侵袭能力。最后,数据分析表明,SLC12A8 在 TCGA 数据集中的大多数肿瘤类型中都有差异表达,并预示着不利的生存结果。此外,与正常组织相比,SLC12A8 mRNA 和蛋白质在癌症组织中的表达明显上调。此外,SLC12A8 的水平还与 ICPs、趋化因子、免疫激活基因、免疫抑制基因、趋化因子受体、化疗反应和免疫治疗效果密切相关。体外实验证实,敲除 SLC12A8 限制了 MDA-MB-231 和 BT-549 细胞的恶性表型。因此,SLC12A8有望成为一种癌症生物标志物,它能与其他ICP相互作用,协同调节免疫微环境。因此,SLC12A8 的鉴定有助于开发新的治疗策略,提高免疫疗法的疗效。
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Identification of SLC12A8 as a valuable prognostic biomarker and immunotherapeutic target by comprehensive pan-cancer analysis

Solute carrier family 12 member 8 (SLC12A8) is a nicotinamide mononucleotide transporter. Despite emerging evidence supporting its potential involvement in oncogenesis, a systematic pan-cancer analysis of SLC12A8 has not been performed. Thus, this research aimed to explore the prognostic implications of SLC12A8 and assess its possible immune-related functions across 33 different tumor types. And multiple datasets were retrieved from the databases of TCGA, GTEx, Broad Institute CCLE, TISCH, HPA, and GDSC2. After this data acquisition, bioinformatics analyses were conducted to assess the potential involvement of SLC12A8 in cancer pathogenesis. These analyses focused on examining the relationship between SLC12A8 and prognosis, drug sensitivity, chemotherapy response, immune checkpoints (ICPs), immune cell infiltration, and immunotherapy efficacy across various tumor types. Furthermore, experimental methods such as EdU assay, wound healing assay, and transwell assay were conducted to evaluate the cell proliferative and invasive abilities. Finally, the data analysis demonstrated that SLC12A8 was differentially expressed and predicted unfavorable survival outcomes in the majority of the tumor types in the TCGA dataset. Furthermore, a notable upregulation in the expression of SLC12A8 mRNA and protein was observed in cancer tissues compared to normal tissues. Additionally, the SLC12A8 levels demonstrated a strong association with ICPs, chemokines, immune-activating genes, immune-suppressive genes, chemokine receptors, chemotherapy response, and immunotherapy efficacy. In vitro experiments substantiated that knockdown of SLC12A8 restricted the malignant phenotypes of MDA-MB-231 and BT-549 cells. So SLC12A8 holds promise as a cancer biomarker with the capacity to interact with other ICPs to synergistically regulate the immune microenvironment. Thus, the identification of SLC12A8 contributes to the development of novel therapeutic strategies for enhancing the efficacy of immunotherapy.

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来源期刊
Gene
Gene 生物-遗传学
CiteScore
6.10
自引率
2.90%
发文量
718
审稿时长
42 days
期刊介绍: Gene publishes papers that focus on the regulation, expression, function and evolution of genes in all biological contexts, including all prokaryotic and eukaryotic organisms, as well as viruses.
期刊最新文献
Early life lipid overload in Native American Myopathy is phenocopied by stac3 knockout in zebrafish. Corrigendum to "Transcriptome analysis to identify key genes involved in terpenoid and rosmarinic acid biosynthesis in lemon balm (Melissa officinalis)" [Gene 773 (2021) 145417]. MiR-433 inhibits cell invasion of glioblastoma via direct targeting TRPM8 based on bioinformatic analysis and experimental validation Effects of hypoxia on survival, apoptosis, and the transcriptome of the Chinese yellow pond turtle (Mauremys mutica). Corrigendum to "Regulation of cell proliferation and migration in gallbladder cancer by zinc finger X-chromosomal protein" [528(2) (2013) 261-266].
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