Sami Hamdan, Shammi More, Leonard Sasse, Vera Komeyer, Kaustubh R Patil, Federico Raimondo
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引用次数: 0
摘要
机器学习(ML)的发展日新月异,在研究领域的应用也日益广泛,这对没有接受过广泛 ML 培训的研究人员提出了挑战。在神经科学领域,ML 可以帮助理解大脑与行为之间的关系,利用磁共振成像和脑电图等数据源诊断疾病和开发生物标记物。ML 主要是建立模型,对未见数据进行准确预测。研究人员使用交叉验证(CV)等技术评估模型的性能和可推广性。然而,选择交叉验证方案和评估 ML 管道具有挑战性,如果操作不当,可能会导致结果被高估和解释错误。在这里,我们创建了 julearn,这是一个开源 Python 库,允许研究人员设计和评估复杂的 ML 管道,而不会遇到常见的陷阱。我们介绍了 julearn 的设计原理、核心功能,并展示了之前发表的三个研究项目实例。Julearn 提供了一个易于使用的环境,简化了对 ML 的访问。凭借其设计、独特的功能、简单的界面和实用的文档,它成为研究项目中一个有用的基于 Python 的库。
Julearn: an easy-to-use library for leakage-free evaluation and inspection of ML models.
The fast-paced development of machine learning (ML) and its increasing adoption in research challenge researchers without extensive training in ML. In neuroscience, ML can help understand brain-behavior relationships, diagnose diseases and develop biomarkers using data from sources like magnetic resonance imaging and electroencephalography. Primarily, ML builds models to make accurate predictions on unseen data. Researchers evaluate models' performance and generalizability using techniques such as cross-validation (CV). However, choosing a CV scheme and evaluating an ML pipeline is challenging and, if done improperly, can lead to overestimated results and incorrect interpretations. Here, we created julearn, an open-source Python library allowing researchers to design and evaluate complex ML pipelines without encountering common pitfalls. We present the rationale behind julearn's design, its core features, and showcase three examples of previously-published research projects. Julearn simplifies the access to ML providing an easy-to-use environment. With its design, unique features, simple interface, and practical documentation, it poses as a useful Python-based library for research projects.