通过分析柯纳斯(Asprella)毒液导管转录组揭示其毒液肽的多样性和新颖性

SciEnggJ Pub Date : 2024-04-22 DOI:10.54645/202417supqch-42
Ryoichi Taguchi, Dan Jethro M Masacupan, Arturo Lluisma
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引用次数: 0

摘要

由于 Asprella 亚属中的锥鱼类栖息于深水生境,因此对它们的研究很少。迄今为止,该支系只有少数肽段被鉴定。在本研究中,研究人员对该支系的一个成员 Conus rolani 的毒液导管转录组进行了挖掘,以发现潜在的锥肽。利用高通量 RNA 测序平台(Illumina)和多 k-mer 从头组装技术,我们发现了 103 个假定的锥肽前体氨基酸序列,包括之前报道过的该物种的少数几个肽。这些序列主要是基于氨基酸序列的新序列,具有多样性,包括 36 个基因超家族(包括 "未指定 "的超家族)。与在其他芋螺物种中观察到的情况一样,O1 基因超家族的多样性最高(12 个不同的序列),但有趣的是,这些序列中没有一个包含与食鱼芋螺(Conus)物种中发现的肽的某些生物活性相关的保守氨基酸。O2 超家族的多样性也很高,但 con-ikot-ikot 和一个未指定的超家族(MMSRMG)的多样性高于其他超家族。在基因表达水平方面,研究不足的祖先分化的M--L-LTVA超家族的MEFRR旁系亲属在转录组中的表达量最高,这表明其具有新的作用。此外,一种与 A2 分泌组 XII 磷脂酶序列高度相似的锥肽是第一个被报道的锥螺体内该磷脂酶组的成员,有可能代表一个新的超家族,从而扩展了锥螺毒液中已知磷脂酶的目录。这些假定的锥肽的发现为我们提供了对 Asprella 组肽的多样性和新颖性的初步了解,并为这些肽的功能表征奠定了基础。
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Diversity and novelty of venom peptides from Conus (Asprella) rolani revealed by analysis of its venom duct transcriptome
Conus species in the sub-genus Asprella are poorly studied because they inhabit deep-water habitats. To date, only a few peptides have been characterized from this clade. In this study, the venom duct transcriptome of a member of this clade, Conus rolani, was mined for potential conopeptides. Using a high-throughput RNA sequencing platform (Illumina) and a multiple k-mer de novo assembly, we found 103 putative conopeptide precursor amino acid sequences, including the few peptides previously reported for this species. The sequences, predominantly novel based on amino acid sequence, were diverse, comprising 36 gene superfamilies (including the “unassigned” superfamilies). As observed in other Conus species, the O1 gene superfamily was the most diverse (12 distinct sequences) but interestingly none of the sequences were found to contain the conserved amino acids associated with certain bioactivities in peptides found in piscivorous Conus species. The O2 superfamily was also highly diverse but con-ikot-ikot and an unassigned superfamily (MMSRMG) were more diverse than the rest of the superfamilies. In terms of gene expression levels, the understudied MEFRR paralog of the ancestral divergent M---L-LTVA superfamily was found to be the most highly expressed in the transcriptome, suggesting a novel role. Additionally, a conopeptide with high sequence similarity to A2 secretory group XII phospholipases is the first reported member of this phospholipase group in Conus and potentially represents a novel superfamily, expanding the catalog of known phospholipases present in cone snail venoms. The discovery of these putative conopeptides provides the first but early glimpse of the diversity and novelty of the peptides in the Asprella group and sets the stage for their functional characterization.
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