作为阿尔茨海默病和 2 型糖尿病诊断生物标记物和治疗靶点的糖代谢相关基因:生物信息学分析

IF 1.7 Q4 NEUROSCIENCES Neurology Research International Pub Date : 2024-04-02 DOI:10.1155/2024/5200222
Shuo Liu, He Chen, Xiaojuan He, Xiao-Ou Yang
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A range of bioinformatics tools were employed for functional annotation, pathway enrichment, protein interaction network construction, module analysis, ROC curve assessment, correlation matrix construction, gene set enrichment analysis, and gene-drug interaction mapping of these DEGs. Key genes were further validated using quantitative real-time polymerase chain reaction (qRT-PCR) in AD and T2DM murine models. Results Our investigation identified 41 glucometabolic-related DEGs, with six prominent genes (G6PD, PKM, ENO3, PFKL, PGD, and TALDO1) being common in both AD and T2DM cohorts. These genes play crucial roles in metabolic pathways including glycolysis, pentose phosphate pathway, and amino sugar metabolism. Their diagnostic potential was highlighted by area under curve (AUC) values exceeding 0.6 for AD and 0.8 for T2DM. Further analysis explored the interactions, pathway enrichments, regulatory mechanisms, and potential drug interactions of these key genes. 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引用次数: 0

摘要

背景阿尔茨海默病(AD)和 2 型糖尿病(T2DM)是两种广泛存在的慢性疾病,它们具有共同的风险因素和分子途径。葡萄糖代谢是细胞平衡和能量供应的关键,在这些疾病中起着至关重要的作用。葡萄糖代谢紊乱与注意力缺失症和 T2DM 的发病机制有关。然而,有关糖代谢基因在 AD 和 T2DM 发病和进展过程中的具体作用的全面研究尚未开展。方法 通过分析基因表达总库(GEO)中的微阵列数据集,我们确定了在 AD 和 T2DM 队列中差异表达的糖代谢基因(DEGs)。我们利用一系列生物信息学工具对这些 DEGs 进行了功能注释、通路富集、蛋白质相互作用网络构建、模块分析、ROC 曲线评估、相关矩阵构建、基因组富集分析和基因-药物相互作用图谱分析。在 AD 和 T2DM 小鼠模型中使用定量实时聚合酶链反应(qRT-PCR)对关键基因进行了进一步验证。结果 我们的研究发现了 41 个与糖代谢相关的 DEGs,其中 6 个主要基因(G6PD、PKM、ENO3、PFKL、PGD 和 TALDO1)在 AD 和 T2DM 队列中都很常见。这些基因在糖酵解、磷酸戊糖途径和氨基糖代谢等代谢途径中发挥着关键作用。这些基因的曲线下面积(AUC)值分别超过了 0.6(AD)和 0.8(T2DM),凸显了它们的诊断潜力。进一步的分析探讨了这些关键基因的相互作用、通路富集、调控机制和潜在的药物相互作用。在 AD 小鼠模型中,定量实时聚合酶链反应(qRT-PCR)分析显示 G6pd、Eno3 和 Taldo1 有显著上调。同样,在 T2DM 小鼠模型中,也观察到 G6pd、Pfkl、Eno3 和 Pgd 的表达水平升高。结论 我们的严谨研究从糖代谢的角度揭示了 AD 与 T2DM 之间的分子关联,为药理创新和治疗方法提供了新的机遇。这项研究似乎是首次利用多个数据集广泛研究 AD 和 T2DM 中与糖代谢相关的 DEGs 和关键基因。这些见解将加深我们对这些广泛存在的慢性疾病的复杂病理生理学的理解。
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Glucometabolic-Related Genes as Diagnostic Biomarkers and Therapeutic Targets for Alzheimer's Disease and Type 2 Diabetes Mellitus: A Bioinformatics Analysis
Background Alzheimer's disease (AD) and type 2 diabetes mellitus (T2DM) are two widespread chronic disorders characterized by shared risk factors and molecular pathways. Glucose metabolism, pivotal for cellular homeostasis and energy supply, plays a critical role in these diseases. Its disturbance has been linked to the pathogenesis of both AD and T2DM. However, a comprehensive investigation into the specific roles of glucometabolic genes in the onset and progression of AD and T2DM has yet to be conducted. Methods By analyzing microarray datasets from the Gene Expression Omnibus (GEO) repository, we identified differentially expressed glucometabolic genes (DEGs) in AD and T2DM cohorts. A range of bioinformatics tools were employed for functional annotation, pathway enrichment, protein interaction network construction, module analysis, ROC curve assessment, correlation matrix construction, gene set enrichment analysis, and gene-drug interaction mapping of these DEGs. Key genes were further validated using quantitative real-time polymerase chain reaction (qRT-PCR) in AD and T2DM murine models. Results Our investigation identified 41 glucometabolic-related DEGs, with six prominent genes (G6PD, PKM, ENO3, PFKL, PGD, and TALDO1) being common in both AD and T2DM cohorts. These genes play crucial roles in metabolic pathways including glycolysis, pentose phosphate pathway, and amino sugar metabolism. Their diagnostic potential was highlighted by area under curve (AUC) values exceeding 0.6 for AD and 0.8 for T2DM. Further analysis explored the interactions, pathway enrichments, regulatory mechanisms, and potential drug interactions of these key genes. In the AD murine model, quantitative real-time polymerase chain reaction (qRT-PCR) analysis revealed significant upregulation of G6pd, Eno3, and Taldo1. Similarly, in the T2DM murine model, elevated expression levels of G6pd, Pfkl, Eno3, and Pgd were observed. Conclusion Our rigorous research sheds light on the molecular interconnections between AD and T2DM from a glucometabolic perspective, revealing new opportunities for pharmacological innovation and therapeutic approaches. This study appears to be the first to extensively investigate glucometabolic-associated DEGs and key genes in both AD and T2DM, utilizing multiple datasets. These insights are set to enhance our understanding of the complex pathophysiology underlying these widespread chronic diseases.
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来源期刊
CiteScore
3.50
自引率
0.00%
发文量
10
审稿时长
17 weeks
期刊介绍: Neurology Research International is a peer-reviewed, Open Access journal that publishes original research articles, review articles, and clinical studies focusing on diseases of the nervous system, as well as normal neurological functioning. The journal will consider basic, translational, and clinical research, including animal models and clinical trials.
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